1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgcctggacacgcctcgtcatgaacgcccacccatccgcgtacctgcccgttggccgacctacccgcctcccccctgccgccctcccgccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCTGGGCCACCAGCACCACCCCCTACAA
species | Chlamydomonas reinhardtii |
transcript | EDP00062 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGAACCTCCTGGTG CACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCEST: gi|10780086|gb|AV636766.1|AV636766
genomic: GACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACG-ACCTCCTGGTGgtgggtggtg ... ccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
EST: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTG CACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCEST: gi|23364047|gb|BU651867.1|BU651867
genomic: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTGgtgggtggtg ... ccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
EST: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTG CACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCEST: gi|23358756|gb|BU646576.1|BU646576
genomic: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTGgtgggtggtg ... ccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
EST: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGNACACGACCTCCTGGTG CACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTTCACCCTGGGCEST: gi|10771309|gb|AV622132.1|AV622132
genomic: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTGgtgggtggtg ... ccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
EST: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTG CACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
genomic: TGACGGGCAAGGGCGTGGCGGCCTTCACGGCGGCACACGACCTCCTGGTGgtgggtggtg ... ccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGC
ctgcccgttggccgacctacccgcctcccccctgccgccctcccgccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCTGGGCCACCAGCACCACCCCCTACAA
cctacccgcctccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcctggacacgcctcgtcatgaacgcccacccatccgcgtacctgcccgttggccgacctacccgcctcccccctgccgccctcccgccctccgcagCACTCGGCGCTGTACCGCTACGGCGTGTCGGTGGGCGCCTCCACCCTGGGCTGGGCCACCAGCACCACCCCCTACAA
- - - - -acacgcc
- - - - - - - - - - catgaac
- - - - - - - - - - - - - - -ccaccca