1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgctcctgaagcctatccgcacgtgcgccacgttcgcataccctcccaagaccactctaccacttccttcactaatcatgaatgtaacccatccccgcagGTCTACAGCCTGAAGGACGGCCAGATTAAGAAGCTGGTGGGACCCATCTCAGGAAACG
species | Chlamydomonas reinhardtii |
transcript | EDO99999 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCAGGCGGCGTGGGACCGGGGACAGGAGCTGCACCTGTACGGCGTG GTCTACAGCCTGAAGGACGGCCAGATTAAGAAGCTGGTGGGACCCATCTCA
genomic: TGGTGCAGGCGGCGTGGGACCGGGGACAGGAGCTGCACCTGTACGGCGTGgtgagggggg ... atccccgcagGTCTACAGCCTGAAGGACGGCCAGATTAAGAAGCTGGTGGGACCCATCTCA
ccaagaccactctaccacttccttcactaatcatgaatgtaacccatccccgcagGTCTACAGCCTGAAGGACGGCCAGATTAAGAAGCTGGTGGGACCCATCTCAGGAAACG
cccatcccc CT-rich tract
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgctcctgaagcctatccgcacgtgcgccacgttcgcataccctcccaagaccactctaccacttccttcactaatcatgaatgtaacccatccccgcagGTCTACAGCCTGAAGGACGGCCAGATTAAGAAGCTGGTGGGACCCATCTCAGGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - atccgca
- - - - - - - - - - - - - - - - - - -ataccct
- - - - - - - - - - - - - - - - - - - - - - -ccaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt