Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacgcgctgtcgcagacaccgcgcgtacgctgccccttgaggttgggggttctaggcagggttgcacgcctgcaatatggcgctccatagcgcctgcacctgctgtaccctgagtccaccctcgagcctcctcgcgcactgatacatccaacttagcatgccccacttcttcgcacacatgcgcacagGCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTGCGCCGCGAGCGCAGCACGACCTTCGCCATCTGGGTCTTCCCCGTCCTGGTGTA

Basic information

species Chlamydomonas reinhardtii
transcript EDO99485
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073579|gb|BQ822917.1|BQ822917
EST:     CGGCCTGGTGCCGGTCATTTGCTCCTGGTTCGTGTCGCCCGTCACCGCTG                         GCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTCCGCC
genomic: CGGCCTGGTGCCGGTCATTTGCTCCTGGTTCGTGTCGCCCGTCACCGCTGgtaagtacgc ... atgcgcacagGCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTGCGCC
EST: gi|16437961|gb|BM003181.1|BM003181
EST:     CGGCCTGGTGCCGGTCATTTGCTCCTGGTTCGTGTCGCCCGTCACCGCTG                         GCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTCCGCC
genomic: CGGCCTGGTGCCGGTCATTTGCTCCTGGTTCGTGTCGCCCGTCACCGCTGgtaagtacgc ... atgcgcacagGCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTGCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgcactgatacatccaacttagcatgccccacttcttcgcacacatgcgcacagGCATTGCCTCGTCCATCCTGTTCTTCCTGAACCGCATCTTCGTGCTGCGCCGCGAGCGCAGCACGACCTTCGCCATCTGGGTCTTCCCCGTCCTGGTGTA
   cactgat  putative branch site (score: 3)