1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtggtgccagtcgtgcctccctggtgttgtatccacttatatcgtttgtgttttacctctcagcgcgatgtgcatgtctgctttcttcgcgtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGATGAAGCAGTTTGTGATTGACGGCAGCAAGTGCATCCTCAACAAGCCCA
species | Chlamydomonas reinhardtii |
transcript | EDO98981 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|8514354|gb|BE122249.1|BE122249
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|161808568|gb|FC094884.1|FC094884
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14242417|gb|BG861233.1|BG861233
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14237056|gb|BG855872.1|BG855872
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGGTGATGAGCCACGAEST: gi|14235139|gb|BG853955.1|BG853955
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCG-TGATGAGCCACGA
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|161797931|gb|FC087420.1|FC087420
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14238089|gb|BG856905.1|BG856905
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|15694596|gb|BI718901.1|BI718901
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|15370986|gb|BI530412.1|BI530412
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14240342|gb|BG859158.1|BG859158
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|22076196|gb|BQ824972.1|BQ824972
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14242051|gb|BG860867.1|BG860867
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|15370984|gb|BI530410.1|BI530410
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|6544166|gb|AV389950.1|AV389950
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGEST: gi|14240161|gb|BG858977.1|BG858977
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14235138|gb|BG853954.1|BG853954
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|22071304|gb|BQ820642.1|BQ820642
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|14240115|gb|BG858931.1|BG858931
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTTCGCCCCGCTCCATAAG GTGGCTGAGTCGGTTGGCTGCAAACTGGTGGAGGGCGTGATGAGCCACCAGEST: gi|49464156|gb|BP092069.1|BP092069
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGEST: gi|16430815|gb|BI996041.1|BI996041
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
EST: TGATACGCCCCGGCATGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAG GTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
genomic: TGATACGCCCCGGCAAGCACATCGCCGACGTGTCCGCCCCGCTCCAAAAGgtgcggccgg ... gtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAG
ttgtgttttacctctcagcgcgatgtgcatgtctgctttcttcgcgtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGATGAAGCAGTTTGTGATTGACGGCAGCAAGTGCATCCTCAACAAGCCCA
tttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgccagtcgtgcctccctggtgttgtatccacttatatcgtttgtgttttacctctcagcgcgatgtgcatgtctgctttcttcgcgtgtgagcagGTGGCTGAGTCGTTTGGCTGCAACCTGGTGGAGGGCGTGATGAGCCACGAGATGAAGCAGTTTGTGATTGACGGCAGCAAGTGCATCCTCAACAAGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - ttgtatc
- - - - - - - - - - - - - - - - - acttata
- - - - - - - - - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtgca