1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatggaggaccagattgctcagcatactgcatactaaagatccggtcgtattcctacaccagacgcgatcttcacagcaaaaactcttccccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAAC
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTC-TAAGGCCTGEST: gi|15368961|gb|BI528387.1|BI528387
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGEST: gi|14238251|gb|BG857067.1|BG857067
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG CGGGGACAAGACCAGCCGCTAGACGCTGCCGCTGTCGG-TGCCTAAAGCCTEST: gi|161817773|gb|FC100010.1|FC100010
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGT-CCTAAGGCCT
EST: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGEST: gi|161817687|gb|FC099976.1|FC099976
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
EST: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACG CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGEST: gi|10789885|gb|AV627250.1|AV627250
genomic: GCCTACCTGGATAGCCAGGACGTGGCCAAGATGACCATGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGG
EST: TGGCGGCGCTACG CGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
genomic: TGGCGGCGCTACGgtgaggccgt ... ccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTG
tcgtattcctacaccagacgcgatcttcacagcaaaaactcttccccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAAC
ctcttccccattcac CT-rich tract
aaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggaggaccagattgctcagcatactgcatactaaagatccggtcgtattcctacaccagacgcgatcttcacagcaaaaactcttccccattcacagCGGGGACAAGACCAGCCGCAAGACGCTCCCGCTGTCGGGTCCTAAGGCCTGGACCACCAAGGAGGTCATCGAGCTGTGCGAGAAGATGGCGGACACCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - atactaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagcaa