1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggtttggcggcgggggcactcctggcggaaccagcccactggctgggcacgcctgtctgccacgctgtgacctgggtggccgtatcttatgtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGCCCCACGGCGGCCACCTCAGCCACGGCTACCAGACTGATACCAAGAAGA
species | Chlamydomonas reinhardtii |
transcript | EDO97448 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCEST: gi|10771707|gb|AV622530.1|AV622530
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGC
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10126090|gb|BE724794.1|BE724794
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|6550255|gb|AV396039.1|AV396039
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGEST: gi|6542140|gb|AV387924.1|AV387924
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10126692|gb|BE725412.1|BE725412
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10784593|gb|AV641265.1|AV641265
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGEST: gi|15698243|gb|BI722548.1|BI722548
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10127493|gb|BE726197.1|BE726197
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|23363367|gb|BU651187.1|BU651187
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10790498|gb|AV627864.1|AV627864
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTEST: gi|23363125|gb|BU650945.1|BU650945
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCT
EST: CGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10788685|gb|AV626405.1|AV626405
genomic: CGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGEST: gi|10771492|gb|AV622315.1|AV622315
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAG GTGTACACGGCGCTGCTGCAGCCGCEST: gi|10792252|gb|AV629618.1|AV629618
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGC
EST: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTACAG GTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
genomic: AGTGGGGCGTCAACGTGCAGTCGCTGTCGGGCTCGCCCTCCAACTTCCAGgtgggggcgg ... gtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTG
ggcacgcctgtctgccacgctgtgacctgggtggccgtatcttatgtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGCCCCACGGCGGCCACCTCAGCCACGGCTACCAGACTGATACCAAGAAGA
tatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttggcggcgggggcactcctggcggaaccagcccactggctgggcacgcctgtctgccacgctgtgacctgggtggccgtatcttatgtgttcgcagGTGTACACGGCGCTGCTGCAGCCGCACGACCGCATCATGGCGCTGGACCTGCCCCACGGCGGCCACCTCAGCCACGGCTACCAGACTGATACCAAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG