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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggcccgaccctgccagcgcgccgaccgccttttccttgtcccagtctcgtcgcctcccccccccccccccctttcccccctgtccctcctgccccacagTACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGCTGCTGGGCACGCACAGCCGCAAGCCCTGGACCAAGTTCATCAACGCCGACAACCAGCACCTGGCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO97438
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161804206|gb|FC088079.1|FC088079
EST:     AGATCGCGCGAGTACTGGGCACCGATGACCTGTACGCCTACCTGGAGAAG                         TACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGTTGCTGGGCACGCACAGC
genomic: AGATCGCGCGAGTGCTGGGCACCGATGACCTGTACGCCTACCTGGAGAAGgtggggcggg ... tgccccacagTACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGCTGCTGGGCACGCACAGC
EST: gi|14242535|gb|BG861351.1|BG861351
EST:     AGATCGCGCGAGTGCTGGGCACCGATGACCTGTACGCCTACCTGGAGAAG                         TACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGCTGCTGGGCACGCACAGC
genomic: AGATCGCGCGAGTGCTGGGCACCGATGACCTGTACGCCTACCTGGAGAAGgtggggcggg ... tgccccacagTACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGCTGCTGGGCACGCACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgtcgcctcccccccccccccccctttcccccctgtccctcctgccccacagTACGGCCTGGAGCTGGAGCCCCAGCAGGAGTCGCTGCTGGGCACGCACAGCCGCAAGCCCTGGACCAAGTTCATCAACGCCGACAACCAGCACCTGGCCA
        cctccccccccccccc  CT-rich tract