1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcgatctacctgtattattgttagtggacgtgctcatgcacatgcgcacacgcctcctaacacaacgcgcctgctggctatcacaaacttccatctgcagGGCTTCTACGACTTCGTAGCGCTGCCTCTG
species | Chlamydomonas reinhardtii |
transcript | EDO96933 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
gcacacgcctcctaacacaacgcgcctgctggctatcacaaacttccatctgcagGGCTTCTACGACTTCGTAGCGCTGCCTCTG
tcctaac putative branch site (score: 1)
cttccatct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgatctacctgtattattgttagtggacgtgctcatgcacatgcgcacacgcctcctaacacaacgcgcctgctggctatcacaaacttccatctgcagGGCTTCTACGACTTCGTAGCGCTGCCTCTG
- - - - - tgtatta
- - - - - - - - - tgttagt
- - - - - - - - - - - - - - - - - -atgcaca
- - - - - - - - - - - - - - - - - - - - - -gcgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaact