1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtggtgctcttcttgttcatcgccttggtgaaggccttgcatgctcaattgctgggtatggtaatattgaagtccatcctggctgttgcacgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCCAGGACATTCACACACGCACAGGGTGATGCGCATGATGTGAGCTAGTATG
species | Chlamydomonas reinhardtii |
transcript | EDP09734 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCCAACGCCATGGACCAAGCCATCATCACGCCCAACGAGTTCGCGCAG ATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCCEST: gi|8932815|gb|BE227576.1|BE227576
genomic: CTGCCAACGCCATGGACCAAGCCATCATCACGCCCAACGAGTTCGCGCAGgtggggagcg ... acgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCC
EST: CTGCCAACGCCATGGCCCAAGCCATCATCACGCCCAACGAGTTCGCGCAG ATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCCEST: gi|9028224|gb|BE238264.1|BE238264
genomic: CTGCCAACGCCATGGACCAAGCCATCATCACGCCCAACGAGTTCGCGCAGgtggggagcg ... acgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCC
EST: CTGCCAACGCCATGGACCAAGCCATCATCACGCCCAACGAGTTCGCGCAG ATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCC
genomic: CTGCCAACGCCATGGACCAAGCCATCATCACGCCCAACGAGTTCGCGCAGgtggggagcg ... acgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCC
tcaattgctgggtatggtaatattgaagtccatcctggctgttgcacgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCCAGGACATTCACACACGCACAGGGTGATGCGCATGATGTGAGCTAGTATG
taatattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtggtgctcttcttgttcatcgccttggtgaaggccttgcatgctcaattgctgggtatggtaatattgaagtccatcctggctgttgcacgaccgcagATCAAGACCAAGATCATCGCACAGATCCAGGACTGAGCTGCAGGAGTTGCCAGGACATTCACACACGCACAGGGTGATGCGCATGATGTGAGCTAGTATG
tgtggtg
- - - - - ttcttgt
- - - - - - - - - - - - - - - - - - - - -atgctca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtat