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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgcatacactgtcctgcgcgtactggtttccttgtgctcttgaacacacacgtgcgcggccccccctccgcccctgtccccgccgctacccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAGTCCGTGACCCTGGACCTGAACCACGAGCTGGCGGGGCAGGCGCTCACCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09617
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8514425|gb|BE122320.1|BE122320
EST:     TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|10771406|gb|AV622229.1|AV622229
EST:     TCTCCGTGCCCATCAGCCAGGCGCGGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|161813771|gb|FC104475.1|FC104475
EST:     TCTCCGTGCCCATCAGCCAAGCGCCGGCAGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|161818190|gb|FC101896.1|FC101896
EST:     TCTCCGTGCCCATCAGCCAAGCGCCGGCAGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|161792760|gb|FC080701.1|FC080701
EST:     TCTCCGTGCCCATCAGCCAAGCGCCGGCAGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|15697532|gb|BI721837.1|BI721837
EST:     TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|16432720|gb|BI997946.1|BI997946
EST:     TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|10770507|gb|AV621332.1|AV621332
EST:     TCTCCGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|23362117|gb|BU649937.1|BU649937
EST:     TCTCCGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
EST: gi|14232374|gb|BG851190.1|BG851190
EST:     TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAG                         GTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG
genomic: TCTCTGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGGCATGAAGgtgcgcgcgc ... cccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcgcatacactgtcctgcgcgtactggtttccttgtgctcttgaacacacacgtgcgcggccccccctccgcccctgtccccgccgctacccgccgcagGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAGTCCGTGACCCTGGACCTGAACCACGAGCTGGCGGGGCAGGCGCTCACCT

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