1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggcattgggcgttagcgtcgtgcgcggctctagcctcacattgcgctcctccattgcaagttgtccgcaccaacggacgcctttcccccacaaacgcagCGCGCAACGGCGACGCAACGAATGGAGGAGGCCCGGGGATTCTCCTCCTCCACACCCACCACAACACTGCTCAAAGGCGGCGCCGCCACGGCGACGCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP09557 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCGGGCACTCATCCAGAAGTCCCGGCACACGGCCGGCAAGCTCTAC CGCGCAACGGCGACGCAACGAATGGAGGAEST: gi|16071551|gb|BI873547.1|BI873547
genomic: AGGCGCGGGCACTCATCCAGAAGTCCCGGCACACGGCCGGCAAGCTCTACgtgagtgttg ... acaaacgcagCGCGCAACGGCGACGCAACGAATGGAGGA
EST: AGGCGCGGGCACTCATCCAGAAGTCCCGGCACACGGCCGGCAAGCTCTAC CGCGCAACGGCGACGCAACGAATGGAGG
genomic: AGGCGCGGGCACTCATCCAGAAGTCCCGGCACACGGCCGGCAAGCTCTACgtgagtgttg ... acaaacgcagCGCGCAACGGCGACGCAACGAATGGAGG
gctcctccattgcaagttgtccgcaccaacggacgcctttcccccacaaacgcagCGCGCAACGGCGACGCAACGAATGGAGGAGGCCCGGGGATTCTCCTCCTCCACACCCACCACAACACTGCTCAAAGGCGGCGCCGCCACGGCGACGCTGG
cgcctttcccccac CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcattgggcgttagcgtcgtgcgcggctctagcctcacattgcgctcctccattgcaagttgtccgcaccaacggacgcctttcccccacaaacgcagCGCGCAACGGCGACGCAACGAATGGAGGAGGCCCGGGGATTCTCCTCCTCCACACCCACCACAACACTGCTCAAAGGCGGCGCCGCCACGGCGACGCTGG
- - - - - - - - - - - - - - - - - cctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccaac