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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggatacctgccgcgggcctgtgttgttgtcatggcggcataagtggcctttgcgggcacggccggctcgtggccctgtggaggctgtccacagcttctgtgcgcacctgttgcgctgcaatgctaccttgtcgtcaatcctcatcgtacttccgttgcaactccggtatggccgatccagGCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACGTCAACGTCACGATCACCGTCACCAACGTGTCGGTCGAGTTCACAAAGCT

Basic information

species Chlamydomonas reinhardtii
transcript EDP07962
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161802289|gb|FC091580.1|FC091580
EST:     ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAG                         GCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG
genomic: ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAGgtgcggatac ... gccgatccagGCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG
EST: gi|161802738|gb|FC092445.1|FC092445
EST:     ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAG                         GCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG
genomic: ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAGgtgcggatac ... gccgatccagGCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG
EST: gi|161795197|gb|FC078809.1|FC078809
EST:     ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAG                         GCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG
genomic: ATTCGGTGAGGGGCAGCTCAGTGGCAACTCCAGCTTCAGCGGTGCATCAGgtgcggatac ... gccgatccagGCGCCCGGCGGACGCTGGCTTGGTTCCCGGAGAACGTCAGCCCTCGCGACG