1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcagcgtgcaaccccacgcgctgccaccccaacccccacgcccaacccccaaaccccccaaaccccaaaccccaaggcccccaaaccccgccacgtgcagGACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGCGGCCGGGACTTTAAACTGGTGCCCATCATGGTCGGGGCGCTCACCACGG
species | Chlamydomonas reinhardtii |
transcript | EDP07544 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAG GACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGCEST: gi|23360380|gb|BU648200.1|BU648200
genomic: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAGgtggggcgcg ... ccacgtgcagGACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGC
EST: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAG GACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGCEST: gi|10769136|gb|AV619961.1|AV619961
genomic: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAGgtggggcgcg ... ccacgtgcagGACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGC
EST: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAG GACGAGCACAGCCT
genomic: AGCTCAGGGACAGCGGCAAGTTCGACAGCATGTCCCAGGACGTGGACGAGgtggggcgcg ... ccacgtgcagGACGAGCACAGCCT
cccccaaaccccccaaaccccaaaccccaaggcccccaaaccccgccacgtgcagGACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGCGGCCGGGACTTTAAACTGGTGCCCATCATGGTCGGGGCGCTCACCACGG
ccccgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagcgtgcaaccccacgcgctgccaccccaacccccacgcccaacccccaaaccccccaaaccccaaaccccaaggcccccaaaccccgccacgtgcagGACGAGCACAGCCTGGAGTTGCACACGCCGTACATCGTACACACCATGCGCGGCCGGGACTTTAAACTGGTGCCCATCATGGTCGGGGCGCTCACCACGG
- - - -gcaaccc
- - - - -aacccca
- - - - - - - cacgcgc
- - - - - - - - - - - - -accccaa
- - - - - - - - - - - - - - - - - - -acgccca
- - - - - - - - - - - - - - - - - - - - - - - ccccaaa