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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgtgtggccctggtggcatcttgatgcattaggctgttttgggtctgttggcccggaagctcaatgcaatatgggtctgaacggagtgggcgccgccaactccgttcagggctgctagtcccaaatctgtacaggacatttacccgctcctcgcttttgcctaatcacttttgcctctcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGGGCCTGGCCACCCGCCAGCACAGCCAGACCATGATCAACGCCCTGGCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06856
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10787858|gb|AV644530.1|AV644530
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10789657|gb|AV627022.1|AV627022
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|49462820|gb|BP090733.1|BP090733
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|22074316|gb|BQ823396.1|BQ823396
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|6546900|gb|AV392684.1|AV392684
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|34991867|gb|CF565784.1|CF565784
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10782404|gb|AV639084.1|AV639084
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTG
EST: gi|49468760|gb|BP096621.1|BP096621
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|49462167|gb|BP090080.1|BP090080
EST:     GGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: GGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10776290|gb|AV632970.1|AV632970
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10785454|gb|AV642126.1|AV642126
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10785565|gb|AV642237.1|AV642237
EST:     TTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: TTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10784359|gb|AV641031.1|AV641031
EST:     GCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: GCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|49470781|gb|BP098642.1|BP098642
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|7687535|gb|AW758181.1|AW758181
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|10776564|gb|AV633244.1|AV633244
EST:     GACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: GACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
EST: gi|49470064|gb|BP097925.1|BP097925
EST:     CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAG                         CTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG
genomic: CCAAGTACCCCAAGGAGTGGGCTGAGTTCGAGGCCCTGACCAGCTGCAAGgtgggtgtgt ... tcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggacatttacccgctcctcgcttttgcctaatcacttttgcctctcgcccgcagCTGCCCGAGAACTGGGAGGCTGCTCTGCCCCACTTCAAGCCCGAGGACAAGGGCCTGGCCACCCGCCAGCACAGCCAGACCATGATCAACGCCCTGGCGC
                          gcctaat  putative branch site (score: 3)
                                   cttttgcctctcgccc  putative PPT
     attta  TA-rich tract