1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtaggaaggcgcggtatcactcaacacgcatagtttcagcagggcgccgggtctcaactgttggttggaccagctacagtcatacggtatgtagactgaacaccagcttactcctcctgctcacgctgtcgacccgctgttgcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCACCAAGCAGAAGTACCTGGCTTCCATGGAGGGCGCCATCTTTTCCGGCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP05305 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG CCCCAGCCAGCGCACGCCCATTAAGAACTTCTTCCTGGCTGGCGACTTCACEST: gi|9441502|gb|BE441992.1|BE441992
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCACEST: gi|15372155|gb|BI531581.1|BI531581
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCACEST: gi|161812516|gb|FC098592.1|FC098592
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG CCCCAGTCAGCGCACGCCCATCAAGEST: gi|161804116|gb|FC092159.1|FC092159
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAG
EST: AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
tgaacaccagcttactcctcctgctcacgctgtcgacccgctgttgcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCACCAAGCAGAAGTACCTGGCTTCCATGGAGGGCGCCATCTTTTCCGGCAAG
tgctcac putative branch site (score: 2)
ttgccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaggaaggcgcggtatcactcaacacgcatagtttcagcagggcgccgggtctcaactgttggttggaccagctacagtcatacggtatgtagactgaacaccagcttactcctcctgctcacgctgtcgacccgctgttgcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCACCAAGCAGAAGTACCTGGCTTCCATGGAGGGCGCCATCTTTTCCGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG