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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcaaacccgcgagtgctggggatgggcttggcggggtgtgtgaagggctgtgggccgacacctgcggaagggcgttggcgcgaggttggtgatggtgtgcagcccactctttagttgacgccacttcttatcgttctcacccctggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATCATCCGCGAAATGTTCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04786
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161818208|gb|FC101095.1|FC101095
EST:     CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAG                         GTGGTGTCGTCGGCCATTGTGGACAAGTACATTGGCGAGTCGGCGCGCATC
genomic: CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAGgtcagtcaaa ... tggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATC
EST: gi|10774917|gb|AV625740.1|AV625740
EST:     CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAG                         GTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATC
genomic: CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAGgtcagtcaaa ... tggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATC
EST: gi|161793914|gb|FC079827.1|FC079827
EST:     CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAG                         GTGGTGTCGTCGGCCATTGTGGACAAGTACATTGGCGAGTCGGCGCGCATC
genomic: CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAGgtcagtcaaa ... tggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATC
EST: gi|161794482|gb|FC080785.1|FC080785
EST:     CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAG                         GTGGTGTCGTCGGCCATTGTGGACAAGTACATTGGCGAGTCGGCGCGCATC
genomic: CGCTTCTGGCTCGCGCCATCGCCTCCAACATCGACGCCAACTTCCTCAAGgtcagtcaaa ... tggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcccactctttagttgacgccacttcttatcgttctcacccctggaatgcagGTGGTGTCGTCGGCCATCGTAGACAAGTACATTGGCGAGTCGGCGCGCATCATCCGCGAAATGTTCGG
                                   ttctcac  putative branch site (score: 2)
                         cttcttatcgttctca  CT-rich tract
           tttagtt  TA-rich tract