1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccagccaacgcaacgcaacgcatccacaccccatacccggcccgacccacatcaacccaactctcctcctcctctcccttcgccctccccctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGACGTTCGAGGTGCACATCGAGCCGGGCATGAAGCACGGCAGCCGCATCGT
species | Chlamydomonas reinhardtii |
transcript | EDP04706 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACTGCCCACCCA GTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGAEST: gi|15697420|gb|BI721725.1|BI721725
genomic: CAACTGCCCACCCAgtaagcggcg ... ctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGA
EST: AACTGCCCACCCA GTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGAEST: gi|15693198|gb|BI717503.1|BI717503
genomic: AACTGCCCACCCAgtaagcggcg ... ctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGA
EST: CCAGTCGCGCTGCTCGGGCTGCGCCGGCTCCGGATACAACTGCCCACCCA GTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGA
genomic: CCAGTCGCGCTGCTCGGGCTGCGCCGGCTCCGGATACAACTGCCCACCCAgtaagcggcg ... ctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGA
cccacatcaacccaactctcctcctcctctcccttcgccctccccctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGACGTTCGAGGTGCACATCGAGCCGGGCATGAAGCACGGCAGCCGCATCGT
ctctcctcctcctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagccaacgcaacgcaacgcatccacaccccatacccggcccgacccacatcaacccaactctcctcctcctctcccttcgccctccccctccgcccagGTGACTCCTGCACGGCCTGCAAGGGCAAGTGCTTGGTGTCTGACAAGAAGACGTTCGAGGTGCACATCGAGCCGGGCATGAAGCACGGCAGCCGCATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - aacgcaa
- - - - - - - - - - -atccaca
- - - - - - - - - - - - - - - -cataccc