1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtcaccccaccacacgccacctgccccctgcacttcaaacacccgccagccatccacccacccctgaccccgccaccctctgcctcacctgctgctgcagACGCCGCACGTGTCTGCCGCCGTCATCGCACGTGTGTTTTTGGATCCCGACCTGCGGCTGTTCGACTACTGCCCCAAGCGCCTGCTCAACAG
species | Chlamydomonas reinhardtii |
transcript | EDP04432 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ccagccatccacccacccctgaccccgccaccctctgcctcacctgctgctgcagACGCCGCACGTGTCTGCCGCCGTCATCGCACGTGTGTTTTTGGATCCCGACCTGCGGCTGTTCGACTACTGCCCCAAGCGCCTGCTCAACAG
gcctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaccccaccacacgccacctgccccctgcacttcaaacacccgccagccatccacccacccctgaccccgccaccctctgcctcacctgctgctgcagACGCCGCACGTGTCTGCCGCCGTCATCGCACGTGTGTTTTTGGATCCCGACCTGCGGCTGTTCGACTACTGCCCCAAGCGCCTGCTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- -accccac
- - - - - cacacgc
- - - - - - - - -cacctgc
- - - - - - - - - - - - - cctgcac
- - - - - - - - - - - - - - - - - - aaacacc
- - - - - - - - - - - - - - - - - - - - - - - cagccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacccac