1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gggaggtagccgggatgctttgggctgcctgcttctgggagcaggaacctgcctgttggcattgcgcccacctcgcctgacaccaccatcgtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGGACAGCGAGAGCGGCAGCAAGCTCATCAACAACTGCGCCGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04078 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAG GTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGEST: gi|15696363|gb|BI720668.1|BI720668
genomic: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAGgtgggggcgg ... gtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGG
EST: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAG GTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGEST: gi|22073224|gb|BQ822562.1|BQ822562
genomic: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAGgtgggggcgg ... gtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGG
EST: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAG GTGCTTGAGCCGCTGEST: gi|22048369|gb|BQ808187.1|BQ808187
genomic: CGGCGCTGGACAGCCTGGACGCAGTGGACCGCGCGCTGGAGGCGGCGCAGgtgggggcgg ... gtgccgacagGTGCTTGAGCCGCTG
EST: GCGCGCTGGAGGCGGCGCAG GTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGEST: gi|22048366|gb|BQ808186.1|BQ808186
genomic: GCGCGCTGGAGGCGGCGCAGgtgggggcgg ... gtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGG
EST: GCGCGCTGGAGGCGGCGCAG GTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGG
genomic: GCGCGCTGGAGGCGGCGCAGgtgggggcgg ... gtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGG
aacctgcctgttggcattgcgcccacctcgcctgacaccaccatcgtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGGACAGCGAGAGCGGCAGCAAGCTCATCAACAACTGCGCCGAG
gcctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaggtagccgggatgctttgggctgcctgcttctgggagcaggaacctgcctgttggcattgcgcccacctcgcctgacaccaccatcgtgccgacagGTGCTTGAGCCGCTGCGGCCCCGCGCCGTGACGCTGGACGGCGTGACTCGGGACAGCGAGAGCGGCAGCAAGCTCATCAACAACTGCGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - -ttgggct
- - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaccac