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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagctgggctgcccggcggcagaggcgaaggcgcgcagcagtgtgttgggagcacagggccaaagtggctgtacagaaccacgcatgggatttacgctgctcggtgggcgcacgccggcccggcctgcggacacgcatacccccgcgcaacacgggccaacccttcccttccttcccaccaaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGATCATCAAGCACCTCATCATCGGCAGCGAGGGCACGCTGGGCTTCGTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01639
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784603|gb|AV641275.1|AV641275
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAG
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAG
EST: gi|10784314|gb|AV640986.1|AV640986
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|6547630|gb|AV393414.1|AV393414
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10783188|gb|AV639860.1|AV639860
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10790055|gb|AV627421.1|AV627421
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAG
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAG
EST: gi|10789136|gb|AV626856.1|AV626856
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10791276|gb|AV628642.1|AV628642
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10784537|gb|AV641209.1|AV641209
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10792310|gb|AV629676.1|AV629676
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10792476|gb|AV629842.1|AV629842
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
EST: gi|10790801|gb|AV628167.1|AV628167
EST:     GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCG                         GCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA
genomic: GGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGCACCACCGgtaagagctg ... aaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacccccgcgcaacacgggccaacccttcccttccttcccaccaaacgcacagGCTACTCCCTGAACGCGCTGGTGGACTTCCCGGTGGACAACCCCATTGAGATCATCAAGCACCTCATCATCGGCAGCGAGGGCACGCTGGGCTTCGTCAG
                         cccttcccttccttcc  CT-rich tract