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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggaaagaaggacagcgattgcggcacagagtacgagggtgctagagcgctgatgcaacctgtacccacaaagtaccaaccatccaggcaacatgttcgtttctccggatgcagGCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACGTCGGCGCAGCACCGACCGGTGAACGCAGCGGCGCAGTGGCTCAAGAGCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01577
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161793423|gb|FC077295.1|FC077295
EST:     CCTGCCACCCGGTACTCAAGGACAGCCGCGAGCTGAACACCTTCCTGCAG                         GCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACG
genomic: CCTGCCACCCGGTACTCAAGGACAGCCGCGAGCTGAACACCTTCCTGCAGgtgggtggaa ... ccggatgcagGCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACG
EST: gi|23367814|gb|BU655648.1|BU655648
EST:     CCTGCCACCCGGTACTCAAGGACAGCCGCGAGCTGAACACCTTCCTGCAG                         GCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACG
genomic: CCTGCCACCCGGTACTCAAGGACAGCCGCGAGCTGAACACCTTCCTGCAGgtgggtggaa ... ccggatgcagGCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtacccacaaagtaccaaccatccaggcaacatgttcgtttctccggatgcagGCGAACGAGGAGGCGTGGATGCTCGAGATCGCCAAGTGGCAGGCGGAGACGTCGGCGCAGCACCGACCGGTGAACGCAGCGGCGCAGTGGCTCAAGAGCC
                                    ttcgtttctcc  CT-rich tract