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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttggcctggtccccatgcctgcaggccgaatgacctggctggaagccgaaagaaatctaaagcgtgtcgatctgactactgatgtacccttttttccacccacagGGTGAATGTATCTTGTTCATGCAGGACTGGCGATTGGCGCTCACAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01124
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467286|gb|BP095199.1|BP095199
EST:     CCGCCCTCGCCTTCATGCATTCGCGCGGCGTGTGCCACGGCAACATCAAG                         GGTGAATGTATCTTGTACATGCAGGACTGGCGATTGGCGCTCACAG
genomic: CCGCCCTCGCCTTCATGCATTCGCGCGGCGTGTGCCACGGCAACATCAAGgtgcgttggc ... ccacccacagGGTGAATGTATCTTGTTCATGCAGGACTGGCGATTGGCGCTCACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatctaaagcgtgtcgatctgactactgatgtacccttttttccacccacagGGTGAATGTATCTTGTTCATGCAGGACTGGCGATTGGCGCTCACAG
                          tactgat  putative branch site (score: 2)
                                  tacccttttttccacc  CT-rich tract
                                       tttttt  TA-rich tract