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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacctcggccggtcactggtacggtccctgacacaaacggctcatccatgatctggcactaactgctccttgctgatgtgtatgtcgatttgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCGCGCTACGGCGTCGCAGCCTGGCGCCGCCGGCCAACGAGGCTGCGTGGCT

Basic information

species Chlamydomonas reinhardtii
transcript EDO98665
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34993690|gb|CF567607.1|CF567607
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|10772407|gb|AV623230.1|AV623230
EST:     ACTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAG
EST: gi|6545895|gb|AV391679.1|AV391679
EST:     TCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACATCTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|6547029|gb|AV392813.1|AV392813
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|10769591|gb|AV620416.1|AV620416
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|23367125|gb|BU654944.1|BU654944
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|34984847|gb|CF558764.1|CF558764
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|6547417|gb|AV393201.1|AV393201
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|6545513|gb|AV391297.1|AV391297
EST:     -CTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|6545428|gb|AV391212.1|AV391212
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGNACA-CTTCGACAACGCCGCGGAGNTAA-GCGG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGG-ACAACTTCGACAACGCCGCGGAG-TAAAGCGG
EST: gi|10125857|gb|BE724561.1|BE724561
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|10772132|gb|AV622955.1|AV622955
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGAC
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGAC
EST: gi|34987286|gb|CF561203.1|CF561203
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|16431118|gb|BI996344.1|BI996344
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|7686988|gb|AW757636.1|AW757636
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|34987287|gb|CF561204.1|CF561204
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|15370641|gb|BI530067.1|BI530067
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|23365482|gb|BU653302.1|BU653302
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|22055775|gb|BQ812025.1|BQ812025
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|14229377|gb|BG848193.1|BG848193
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|34993249|gb|CF567166.1|CF567166
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|15695686|gb|BI719991.1|BI719991
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|10773890|gb|AV624713.1|AV624713
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGC
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGC
EST: gi|34984848|gb|CF558765.1|CF558765
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCG
EST: gi|10769647|gb|AV620472.1|AV620472
EST:     CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACG                         ACGTGCCGGATCTGGTGGACAACTTCGACAACGC
genomic: CCTCGGCATGCCCTCCGCTGGTGCCCCCGCCGCTGGTGGCGACGACGACGgtgagggagc ... tgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacctcggccggtcactggtacggtccctgacacaaacggctcatccatgatctggcactaactgctccttgctgatgtgtatgtcgatttgccgcacagACGTGCCGGACCTGGTGGACAACTTCGACAACGCCGCGGAGTAAAGCGGCGCGCTACGGCGTCGCAGCCTGGCGCCGCCGGCCAACGAGGCTGCGTGGCT

- - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtat