1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caggggcgctacaaaacagtcctcaggcgccgggcctgggtatgctcctgcgactgatcatttgtgatgcggcctctgcaacgctgttggccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTACGGCTCGTCCAGCGGCAAGACCCGCGCCACCATCGCCATTGCCGACTGC
species | Chlamydomonas reinhardtii |
transcript | EDO98214 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTAGT TEST: gi|8828611|gb|BE212341.1|BE212341
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcag-
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTAGT TEST: gi|161797192|gb|FC086850.1|FC086850
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcag-
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|9210129|gb|BE337044.1|BE337044
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|8513658|gb|BE121553.1|BE121553
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|8287586|gb|BE025145.1|BE025145
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAEST: gi|161815720|gb|FC103174.1|FC103174
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|10777244|gb|AV633924.1|AV633924
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|161797645|gb|FC083702.1|FC083702
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|14229744|gb|BG848560.1|BG848560
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|161797229|gb|FC086861.1|FC086861
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGNCA-GGGCATGGACGTTTGTCAEST: gi|22059925|gb|BQ813622.1|BQ813622
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTG-CAAGGGCATGGACGTT-GTCA
EST: TTCTTCCTGTGCACCGTGGAGACCGTCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGEST: gi|10191227|gb|BE761303.1|BE761303
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGG
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|161800933|gb|FC084738.1|FC084738
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAEST: gi|14229745|gb|BG848561.1|BG848561
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|161807616|gb|FC094621.1|FC094621
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|15371993|gb|BI531419.1|BI531419
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|9459866|gb|BE452948.1|BE452948
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|10791808|gb|AV629174.1|AV629174
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGEST: gi|161791742|gb|FC078338.1|FC078338
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACG
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTTGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTAEST: gi|23361835|gb|BU649655.1|BU649655
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
EST: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGT GTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
genomic: TTCTTCCTGTGCACCGTGGAGACCGCCTGGCTGGACGGCAAGCACGTCGTgtgagtagtg ... ccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTA
tcctgcgactgatcatttgtgatgcggcctctgcaacgctgttggccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTACGGCTCGTCCAGCGGCAAGACCCGCGCCACCATCGCCATTGCCGACTGC
gactgat putative branch site (score: 3)
atcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggggcgctacaaaacagtcctcaggcgccgggcctgggtatgctcctgcgactgatcatttgtgatgcggcctctgcaacgctgttggccttgcgcagGTTCGGCAAGGTCTGCAAGGGCATGGACGTTGTCAAGAAGGTGGAGGGCTACGGCTCGTCCAGCGGCAAGACCCGCGCCACCATCGCCATTGCCGACTGC
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