1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctgcccagaccatggaatgtaggttttcggctttaaggtatcacagttgcagcctcagaccgcgtctcacgcagcatgtctcattcgcccacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGACTTCAAGCACATCGAGCCGGAGGCACCCGCGCCCGCAAGGACGGTGGCC
species | Chlamydomonas reinhardtii |
transcript | EDO98081 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|15369548|gb|BI528974.1|BI528974
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTTGGCGGEST: gi|16072701|gb|BI874697.1|BI874697
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCT-GGCGG
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACCCTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|14229761|gb|BG848577.1|BG848577
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|14229760|gb|BG848576.1|BG848576
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCA--ACA- CAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGACGGAEST: gi|23363043|gb|BU650863.1|BU650863
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|14237609|gb|BG856425.1|BG856425
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|23362874|gb|BU650694.1|BU650694
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACCCTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|22073645|gb|BQ822983.1|BQ822983
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGAEST: gi|22073669|gb|BQ823007.1|BQ823007
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
agttgcagcctcagaccgcgtctcacgcagcatgtctcattcgcccacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGACTTCAAGCACATCGAGCCGGAGGCACCCGCGCCCGCAAGGACGGTGGCC
gtctcac putative branch site (score: 3)
cccacctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcccagaccatggaatgtaggttttcggctttaaggtatcacagttgcagcctcagaccgcgtctcacgcagcatgtctcattcgcccacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGACTTCAAGCACATCGAGCCGGAGGCACCCGCGCCCGCAAGGACGGTGGCC
- - - - - - - - - tgtaggt
- - - - - - - - - - - - - - - - - - - - -tcacagt
- - - - - - - - - - - - - - - - - - - - - - - - - -agcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacgca