1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccttgccccgctgccgcccaattgcccacttcaatacacccctccttctgccccatgtccctgacacgcccctcccctcccctcctgccccccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCTACTGGGAGTACGCGTACGAGGACTCCATGGACCTCATCGCCAAGCTGC
species | Chlamydomonas reinhardtii |
transcript | EDO96721 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAG TCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCEST: gi|16436775|gb|BM001995.1|BM001995
genomic: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAGgtgggcgggc ... cccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGC
EST: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAG TCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCEST: gi|23359352|gb|BU647172.1|BU647172
genomic: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAGgtgggcgggc ... cccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGC
EST: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAG TCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCEST: gi|239841885|gb|GR283742.1|GR283742
genomic: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAGgtgggcgggc ... cccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGC
EST: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAG TCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCEST: gi|23365346|gb|BU653166.1|BU653166
genomic: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAGgtgggcgggc ... cccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGC
EST: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAG TCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGC
genomic: CGGAGGCGCACCCCATGACGCAGCTCAGCATGGGCATCATGGCGCTGCAGgtgggcgggc ... cccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGC
ttctgccccatgtccctgacacgcccctcccctcccctcctgccccccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCTACTGGGAGTACGCGTACGAGGACTCCATGGACCTCATCGCCAAGCTGC
ccctgac putative branch site (score: 3)
tccctgacacgcccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgccccgctgccgcccaattgcccacttcaatacacccctccttctgccccatgtccctgacacgcccctcccctcccctcctgccccccccctcagTCCGGCAGCCGCTTCCAGTCCGCCTACGCCCGCGGCGTGCACAAGTCGCGCTACTGGGAGTACGCGTACGAGGACTCCATGGACCTCATCGCCAAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - tgcccac
- - - - - - - - - - - - - - - - -atacacc