1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcgggaggcattgctgaccgccagattggacacaccgccttggtcctccacgctcacgcatccctccccgcttcctctccctgccccttgtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAGCGAGCTGGGCAGCGCTTACGGAATCGGCTTCAACCGCCTATTGGCGCT
species | Chlamydomonas reinhardtii |
transcript | EDO96585 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAEST: gi|9460002|gb|BE453015.1|BE453015
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAAGAGGCCTACAAGAEST: gi|49458293|gb|BP086206.1|BP086206
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAEST: gi|10126760|gb|BE725464.1|BE725464
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAEST: gi|49460107|gb|BP088020.1|BP088020
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAEST: gi|161790197|gb|FC076976.1|FC076976
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
EST: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGG GCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGTTGCAGGAGGCCTACAAGA
genomic: CTACGGCGTGGAGGGCTCGGGGCTGCAGCTGGACCTGGTGTATAACCCGGgtgcgttaag ... gtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGA
cctccacgctcacgcatccctccccgcttcctctccctgccccttgtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAGCGAGCTGGGCAGCGCTTACGGAATCGGCTTCAACCGCCTATTGGCGCT
cgctcac putative branch site (score: 3)
catccctccccgcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgggaggcattgctgaccgccagattggacacaccgccttggtcctccacgctcacgcatccctccccgcttcctctccctgccccttgtgcctgcagGCGGCGCCTTTCTGGCCCCCAGTCAGTCCAAGCTGCAGGAGGCCTACAAGAGCGAGCTGGGCAGCGCTTACGGAATCGGCTTCAACCGCCTATTGGCGCT
- - - - - - - - - - - - - - - acacacc