1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggtcgggctgccaacgtatcccacagctcacacctcgataagcctccaagccaagccccttctgacttgcgccgcttctcgcgttccccccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCATGGGCCGCAAGCAGGAGGCCGTGGAGGACGTGCCCTGCGGTAACACCGT
species | Chlamydomonas reinhardtii |
transcript | EDO96511 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTAEST: gi|16073116|gb|BI875112.1|BI875112
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|10792927|gb|AV630293.1|AV630293
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|10773614|gb|AV624437.1|AV624437
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|49468644|gb|BP096505.1|BP096505
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|49465221|gb|BP093134.1|BP093134
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: CGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|7615612|gb|AW721052.1|AW721052
genomic: CGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|10790749|gb|AV628115.1|AV628115
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|10785256|gb|AV641928.1|AV641928
genomic: GCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCAEST: gi|49466239|gb|BP094152.1|BP094152
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: CGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: CGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
tccaagccaagccccttctgacttgcgccgcttctcgcgttccccccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCATGGGCCGCAAGCAGGAGGCCGTGGAGGACGTGCCCTGCGGTAACACCGT
ttctgac putative branch site (score: 2)
cgccgcttctcgcgtt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtcgggctgccaacgtatcccacagctcacacctcgataagcctccaagccaagccccttctgacttgcgccgcttctcgcgttccccccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCATGGGCCGCAAGCAGGAGGCCGTGGAGGACGTGCCCTGCGGTAACACCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - -tcccaca
- - - - - - - - - - - - - -ctcacac