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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcgggtcaacaagcaatgggatgatattggggaaggtaacatgtgggtgggggcgggggtaacatagctgacacgcggacgtgttgccgatgggcttctcagcagctccggcacctgcggggcctccaagtgtcctgaaagcttcgctccgcactccattgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACAGCTGAGCGCTGCCATGCTGTGTGGCGGGCATGGGCACGAGTTCCACGTT

Basic information

species Chlamydomonas reinhardtii
transcript EDP09990
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6543210|gb|AV388994.1|AV388994
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|49468988|gb|BP096849.1|BP096849
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|23364997|gb|BU652817.1|BU652817
EST:     AGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10126372|gb|BE725076.1|BE725076
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|23366793|gb|BU654612.1|BU654612
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10126346|gb|BE725050.1|BE725050
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10126839|gb|BE725543.1|BE725543
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10772139|gb|AV622962.1|AV622962
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGAGCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10773576|gb|AV624399.1|AV624399
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10773103|gb|AV623926.1|AV623926
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10778586|gb|AV635266.1|AV635266
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|6545048|gb|AV390832.1|AV390832
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|8576555|gb|BE129192.1|BE129192
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10792695|gb|AV630061.1|AV630061
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|8576553|gb|BE129190.1|BE129190
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|23362483|gb|BU650303.1|BU650303
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|16071854|gb|BI873850.1|BI873850
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|16072736|gb|BI874732.1|BI874732
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|7687021|gb|AW757669.1|AW757669
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|6545585|gb|AV391369.1|AV391369
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|6541061|gb|AV386845.1|AV386845
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|6544893|gb|AV390677.1|AV390677
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10781839|gb|AV638519.1|AV638519
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10773400|gb|AV624223.1|AV624223
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10127966|gb|BE726782.1|BE726782
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|22063070|gb|BQ815066.1|BQ815066
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|16073420|gb|BI875416.1|BI875416
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10794397|gb|AV631763.1|AV631763
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|22074223|gb|BQ823355.1|BQ823355
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|8513704|gb|BE121599.1|BE121599
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10775223|gb|AV631903.1|AV631903
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|49466099|gb|BP094012.1|BP094012
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10780260|gb|AV636940.1|AV636940
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|23362899|gb|BU650719.1|BU650719
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|6550432|gb|AV396216.1|AV396216
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10779575|gb|AV636255.1|AV636255
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|49459417|gb|BP087330.1|BP087330
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCT
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCT
EST: gi|7593283|gb|AW707422.1|AW707422
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10783173|gb|AV639845.1|AV639845
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10773533|gb|AV624356.1|AV624356
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|10769963|gb|AV620788.1|AV620788
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|7427367|gb|AW661533.1|AW661533
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
EST: gi|22062727|gb|BQ814908.1|BQ814908
EST:     AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTG                         GCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA
genomic: AGGGCACCAAGAAGCAGGGTGTCTCCCTGAAGACCAAGAAGAAGCTGCTGgtgggtgcgg ... tgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcggggcctccaagtgtcctgaaagcttcgctccgcactccattgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACAGCTGAGCGCTGCCATGCTGTGTGGCGGGCATGGGCACGAGTTCCACGTT
                                          cattgat  putative branch site (score: 4)
                                       ctccatt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtgcgggtcaacaagcaatgggatgatattggggaaggtaacatgtgggtgggggcgggggtaacatagctgacacgcggacgtgttgccgatgggcttctcagcagctccggcacctgcggggcctccaagtgtcctgaaagcttcgctccgcactccattgatgtgcagGCCAAGGTGCGCGAGAACGCCCAGAAGTCTGCCTCCTCGTAAGCAGCAACAGCTGAGCGCTGCCATGCTGTGTGGCGGGCATGGGCACGAGTTCCACGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG