1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cggtgccaagcatacgtttgtggggccgtcagacctccccctgcgctcatgcactgtacgacctgtacccgtcgcctgcccccggcccctccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCAGAAGCTGACGGAGCAGCGTGCCAACGCCCTGGCGGCGGAGAAGCAGGGG
species | Chlamydomonas reinhardtii |
transcript | EDP09915 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCA GCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCAEST: gi|6544099|gb|AV389883.1|AV389883
genomic: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCAgtgagtgcgg ... ccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCA
EST: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCA GCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCAEST: gi|22060008|gb|BQ813654.1|BQ813654
genomic: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCAgtgagtgcgg ... ccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCA
EST: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCA GCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCA
genomic: TACATCCTGGCGCAGCAGGAGATCGCGCGGCGGGCGGCGCTGCTGGCGCAgtgagtgcgg ... ccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCA
ctcatgcactgtacgacctgtacccgtcgcctgcccccggcccctccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCAGAAGCTGACGGAGCAGCGTGCCAACGCCCTGGCGGCGGAGAAGCAGGGG
cctgcccccggcccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtgccaagcatacgtttgtggggccgtcagacctccccctgcgctcatgcactgtacgacctgtacccgtcgcctgcccccggcccctccccctgcagGCGCAAGGCTGTGGAGGCGCAGGTGACCAGCGTGGAGAACCAGCTGCAGCAGAAGCTGACGGAGCAGCGTGCCAACGCCCTGGCGGCGGAGAAGCAGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - -aagcata
- - - - - - - -gtttgtg
- - - - - - - - - - - - - - tcagacc
- - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtacga