1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggggtccagaacagggtgatcgttttccacgtcacgggctcgtgaatctgcgtcagcaggtccctcttgtaaccaatgcaatctctgggcaccgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAACCCCACCGACCCGCTCAACAGCGAGGCGGCGGCGCTGCTGATGCGCGA
species | Chlamydomonas reinhardtii |
transcript | EDP09753 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|10788266|gb|AV644938.1|AV644938
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGATGTCATCAATCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|8400882|gb|BE056516.1|BE056516
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGATGTCATCAACCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|49466669|gb|BP094582.1|BP094582
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|16071742|gb|BI873738.1|BI873738
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|22068907|gb|BQ818660.1|BQ818660
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAEST: gi|15699843|gb|BI724148.1|BI724148
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
EST: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCG ACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
genomic: GGGGTCTGTGTGCCTGGACGTCATCAACCAGACCTGGAGCCCGATGTTCGgtaagcgcga ... accgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCA
atctgcgtcagcaggtccctcttgtaaccaatgcaatctctgggcaccgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAACCCCACCGACCCGCTCAACAGCGAGGCGGCGGCGCTGCTGATGCGCGA
ttgtaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggtccagaacagggtgatcgttttccacgtcacgggctcgtgaatctgcgtcagcaggtccctcttgtaaccaatgcaatctctgggcaccgccgcagACCTGGTGAACATCTTCGAGGTGTTCCTGCCGCAGCTGCTGCTGTACCCCAACCCCACCGACCCGCTCAACAGCGAGGCGGCGGCGCTGCTGATGCGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatctc