Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09609
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 3'ss of exon 3
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagc-tcacctgtctctgacccggccc-ttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                                    | |  |     |  |   || ||| |  ||   ||||        || |  |  | |||||   ||| || || |     ||| ||||       ||||  ||||||| ||||||||||||||||||||||||||||| |||||| | ||||| ||||||  |||||| ||||| |                   
----------------------------------------------------------------------------------------------------gtacgtgcgcacacgcgcgcatcagcgatcctcgaccaattttactctctctctctctctctgatgcttaacc-aatcaatggcgcag-

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G162845_T01 (Zea mays), 3'ss of exon 3
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                                    |  |  ||| |    |||      |   |||  |||   |    |  |     | |   | |     |||      ||    ||||       ||||  |||||||||| |||||||||||||||| ||||||| | |||||| | ||||||||||||  ||||||||||||||                   
--------------------------------------------------------------------------------------------------gtgagtgccttcttcgctcaaact--caaactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtcaccgccatcgcag-

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G039723_T01 (Zea mays), 3'ss of exon 3
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                                       |  | || ||| |  |||||     |||  || |   || | |       |   | | |   |  ||      |     ||    |   |||||  |||||||||| |||||||||||||||| ||||||| | |||||| | ||||||||||||  ||||||||||||||                   
------------------------------------------------------------------------------------------------------gtg-cgtgccttcttcgctca---aactcaaactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtcaccgccaccgca-gGCATCATCAAGGGCACCATGACCACCACCCACTTCTACACCTGCGACCAGAGGCTGCTGGACGCGAGCCACCGCGACCTGCGCCGCGCCCGCGCCGCCGC

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM5G821433_T01 (Zea mays), 3'ss of exon 2
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                                       |  | || ||| |  |||||     |||  |||   |    |  |     | |   | |     |||      ||    ||||       ||||  |||||||||| |||||||||||||||| ||||||| | || ||| | ||||||||||||  ||||||||||||||                   
------------------------------------------------------------------------------------------------------gtg-cgtgccttcttcgctca---aactcaaaccatacgtaacggcgcatgcatactcatccgtcaccgtcaccgccaccgcag-

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM5G845611_T01 (Zea mays), 3'ss of exon 4
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctca-cctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                            |||    ||   | | || || |||| | ||  |||   |||  |  || | | | |      || |   ||   ||  | |  |      |||| |       || || ||||| || ||||| || || ||||| |||||||| |||||| | |||||||||||||||||||||||||| |                   
--------------------------------------------------------------------------------------------gtgagacggaggagcctg-ctggtcaccacagtctgctactgcacatgcgcatgcgcagctgactgttttttttttatacaatatt-----gcagGA-------ATCGTGAAGGGGACCATGACGACGACGCACTCGTACACCGGCGACCAGAGGCTGCTGGACGCGTCCCACCGCGACCTCCGGCGGGCCCGCGCGGCGGC

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GLYMA16G04940.1 (Glycine max), 3'ss of exon 4
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                          || | |  |   | |   |    ||   | | || ||| |   |   |  | |     | ||  || | | | ||| |    |  |     |    | |   || ||  |||||||||| ||||||||||| |||||||||||||| |||||  | || || ||||||  |||||| ||||||                    
-----------------------------------------------------------------------------------------ggaatacaatattagagactaaagtgaaggtttacatgttttaaa---gatcatattattctctactatgcat-gccaatagaaactcacacaatccatgacagGTATCATCAAGGGCACCATGACCACCACTCACTCCTACACCGGCGACCAAAGGCTTCTCGACGCGAGCCACCGTGACCTGAGGCGCGCCAGGGCGGCAGC

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GLYMA19G28240.1 (Glycine max), 3'ss of exon 4
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                           | || | |  |  ||    | ||     || |  | | |        |  | |   || | |  |    | |||| |    |  ||      ||  |    || ||  ||||||| || ||||||||||| ||||||||||||||||||||  | || || || |||  |||||| ||||||                    
---------------------------------------------------------------------------------------ctaaaatgacttatg-catgcaatatttgagactaatttatgtgaagaaaagatcatattctctactatg---catgccaatggaaaatgacaatccatga--cagGTATCATCAAGGGTACCATGACCACCACTCACTCCTACACCGGTGACCAAAGGCTTCTTGATGCGAGCCACCGTGACCTGAGGCGTGCAAGGGCAGCAGC

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: AT1G42970.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC
                                                                                                    | | || || | || || |||   ||   | |  |       ||           | |   | ||  |  | | |  ||| | || |     || ||||||||||| || ||||| ||||| |||||||||||||| |||||                                
----------------------------------------------------------------------------------------------------gtacattttattttctctgcttcactacatgtttcaaaatgttt-----------tttttatagctcatac-atgaactgaatcaca-----gGAATTGTCAAGGGGACAATGACAACCACACACTCCTACACCGGAGACCAA-------------------------------

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: PP1S11_397V6.2 (Physcomitrella patens), 3'ss of exon 3
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC------------------------------
                                                                                               |  |  |   ||      | |||        | |||   | |  ||     |||| | ||  ||           | ||||| ||||  |||||||||| ||  ||||||| || |||||||| |||||||||||||| ||||||||| | ||||| || || |||||||| ||| ||                               
-----------------------------------------------------------------------------------------------ctataagcactcggacgctatcattagcaacgcctcgtgcacaaccaactgccttgctcccttcgt---------caaggtgttggacgagaagttcggaatcatcaagGGAACCATGACCACTACCCACTCCTACACTGGTGACCAGAGGCTGCTCGATGCCTCCCACCGTGACTTGAGGAGAGCGCGTGCCGCAGCCCTGAACATTG

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: PP1S11_397V6.3 (Physcomitrella patens), 3'ss of exon 3
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcac-ctgtctctgacccg-gcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC
                                                                        |  |   |||| ||||  ||  |  | ||  |||     || |   |||  |  |  |   | | || || |  ||   | ||   |||||||    |    ||||| ||||  |||||||||| ||  ||||||| || |||||||| |||||||||||||| ||||||||| | ||||| || || |||||||| ||| || 
------------------------------------------------------------------------caccttcgttgtgggtgtgaacgagcaggactataagcactcggacgctatcattagcaacgcctcgtgcacaaccaactgccttgctcccttcgtca----agGTGTTGGACGAGAAGTTCGGAATCATCAAGGGAACCATGACCACTACCCACTCCTACACTGGTGACCAGAGGCTGCTCGATGCCTCCCACCGTGACTTGA

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: EFJ13677 (Selaginella moellendorffii), 3'ss of exon 4
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttg-cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC-------------------
                                                                                                                                         |    |||| |      ||||| || |  | |  | ||   ||   |||       || ||  ||||||| || ||||| || || ||||| |||||||| |||||||||||||| |||||   |||||| ||||| |                   
-----------------------------------------------------------------------------------------------------------------------------------------gtaagttcctccaaaagctctctctcgatcgatgctagaaactcttgcaacttccagGGATCATCAAGGGAACCATGACAACAACACACTCGTACACCGGAGACCAGCGCCTGCTCGACGCCAGCCACCGGGACCTCCGCCGAGCTCGCGCCGCGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070074|gb|BQ819509.1|BQ819509
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34993556|gb|CF567473.1|CF567473
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161808102|gb|FC099215.1|FC099215
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|239841890|gb|GR283747.1|GR283747
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34993726|gb|CF567643.1|CF567643
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGGCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCA-GGGCACGATGACCAC-ACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34983153|gb|CF557070.1|CF557070
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161815697|gb|FC101838.1|FC101838
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34989239|gb|CF563156.1|CF563156
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTCCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161803466|gb|FC093069.1|FC093069
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGGCACGATGACCACCACCCA
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGG-CACGATGACCACCACCCA
EST: gi|10775532|gb|AV632212.1|AV632212
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34990496|gb|CF564413.1|CF564413
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|49463822|gb|BP091735.1|BP091735
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCAT
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCAT
EST: gi|23366194|gb|BU654014.1|BU654014
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10776815|gb|AV633495.1|AV633495
EST:     GCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: GCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10782423|gb|AV639103.1|AV639103
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTCCGGCAT
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCAT
EST: gi|10777358|gb|AV634038.1|AV634038
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10782487|gb|AV639167.1|AV639167
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAG
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAG
EST: gi|161819056|gb|FC108872.1|FC108872
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|7427490|gb|AW661656.1|AW661656
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161798500|gb|FC083995.1|FC083995
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161823171|gb|FC107469.1|FC107469
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161807764|gb|FC096498.1|FC096498
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|7687718|gb|AW758364.1|AW758364
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC
         ctctgac  putative branch site (score: 3)
               cccggcccttcccctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCACTCCTACACCGGTGACCAGCGCCTGCTGGACGCGTCCCACCGCGACCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA