Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgcgggttgccgggcagcgggcaggtgctggcaatgggctcttcggtgggctgttcaatgcttggcgccgcctacgctattacaccttgtgcacagcacctcacgctttttgtcacctgcgacgctgcccacatgcatccgattgctcctgcagGTGTTCTTC

Basic information

species Chlamydomonas reinhardtii
transcript EDP09552
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028153|gb|BE238193.1|BE238193
EST:     TTGTTGGCAACATGGTGGTCACCAACATGCAGAACACCGGGGCGTTCGAG                         GTGTTCTTC
genomic: TTGTTGGCAACATGGTGGTCACCAACATGCAGAACACCGGGGCGTTCGAGgtgcgcgcgg ... gctcctgcagGTGTTCTTC
EST: gi|22068061|gb|BQ818029.1|BQ818029
EST:     TTGTTGGCAACATGGTGGTCACCAACATGCAGAACACCGGGGCGTTCGAG                         GTGTTCTTC
genomic: TTGTTGGCAACATGGTGGTCACCAACATGCAGAACACCGGGGCGTTCGAGgtgcgcgcgg ... gctcctgcagGTGTTCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcacgctttttgtcacctgcgacgctgcccacatgcatccgattgctcctgcagGTGTTCTTC
 acctcac  putative branch site (score: 3)
                                           ttgctcct  putative PPT
       tttttgt  TA-rich tract