1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgtggtcttcaccacgggatggccttgccaaccggttgaggggccggaattgatgcccttcgccccgcgcacccgcggcatgacctaatgcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTACAGCGGCCGTGGCAGCAGCAAATGCGGTAGCAGCCAGCGCAGTGAGGC
species | Chlamydomonas reinhardtii |
transcript | EDP09379 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAG AAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTEST: gi|16072325|gb|BI874321.1|BI874321
genomic: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAGgtaggcgggg ... gcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
EST: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAG AAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTEST: gi|14229549|gb|BG848365.1|BG848365
genomic: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAGgtaggcgggg ... gcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
EST: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAG AAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTEST: gi|15692624|gb|BI716929.1|BI716929
genomic: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAGgtaggcgggg ... gcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
EST: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAG AAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTEST: gi|16433071|gb|BI998297.1|BI998297
genomic: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAGgtaggcgggg ... gcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
EST: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAG AAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
genomic: AGAGCGTCATCCACGGCCTCCTCACCGAGGAGGGGCGAGAGCATGCCAAGgtaggcgggg ... gcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCT
cggaattgatgcccttcgccccgcgcacccgcggcatgacctaatgcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTACAGCGGCCGTGGCAGCAGCAAATGCGGTAGCAGCCAGCGCAGTGAGGC
acctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggtcttcaccacgggatggccttgccaaccggttgaggggccggaattgatgcccttcgccccgcgcacccgcggcatgacctaatgcttgcgcagAAGCTGTTCCAGGATGCGGCCTCGTCCGTGCATGGCTACTGAGGCCTGGCTACAGCGGCCGTGGCAGCAGCAAATGCGGTAGCAGCCAGCGCAGTGAGGC
gtgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacccg