1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...actagttcccacgccacgcattgctgcaacagccctgcctcctccggctaaccttccacatccccaacaccactccctctctgcacccgcacccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCGTGGACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCA
species | Chlamydomonas reinhardtii |
transcript | EDP09352 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAG GACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCEST: gi|22077026|gb|BQ825802.1|BQ825802
genomic: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAGgtgcgcgcgt ... acccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
EST: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAG GACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCEST: gi|16433061|gb|BI998287.1|BI998287
genomic: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAGgtgcgcgcgt ... acccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
EST: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAG GACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCEST: gi|22073616|gb|BQ822954.1|BQ822954
genomic: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAGgtgcgcgcgt ... acccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
EST: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAG GACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCEST: gi|22072330|gb|BQ821668.1|BQ821668
genomic: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAGgtgcgcgcgt ... acccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
EST: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAG GACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
genomic: AGGCCAAGCTCTCCACCACCTACTTCCAGCTGGCTGACGAGATTGCTCAGgtgcgcgcgt ... acccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCC
ggctaaccttccacatccccaacaccactccctctctgcacccgcacccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCGTGGACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCA
ggctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagttcccacgccacgcattgctgcaacagccctgcctcctccggctaaccttccacatccccaacaccactccctctctgcacccgcacccatgcagGACGAGATTGCCCACGTGCGCGTGCTGCGCTCCGTGCTGGGTGATGCCGCCGTGGACCAGCCCCTGATGGACATTGGCAACGCCTTCGCCGTCGCCGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - -ccacgca
- - - - - - - - - - - - tgcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacca