1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gggtgctgcagcacggcgctgcagttggcgcccgcaggcttggtagtcgctgaccggccccgcgccacatcgtgcctcccgcccttgcgctcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGACGCCTACGTGGCCTACCGCATCATGGAGAAGGTGCAGCAGAACCAG
species | Chlamydomonas reinhardtii |
transcript | EDP09268 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAG GTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGACEST: gi|22062960|gb|BQ815021.1|BQ815021
genomic: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcgggg ... tcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
EST: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAG GTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
genomic: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcgggg ... tcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
gtcgctgaccggccccgcgccacatcgtgcctcccgcccttgcgctcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGACGCCTACGTGGCCTACCGCATCATGGAGAAGGTGCAGCAGAACCAG
cgctgac putative branch site (score: 3)
cctcccgcccttgcgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgctgcagcacggcgctgcagttggcgcccgcaggcttggtagtcgctgaccggccccgcgccacatcgtgcctcccgcccttgcgctcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGACGCCTACGTGGCCTACCGCATCATGGAGAAGGTGCAGCAGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccaca