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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcggctgcatgcaggctttgtagttctcgtctgctgtccctggcgcacgcgagattccttattgacttgaccgaccctcgtcctgttcctgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCGCCGCCCTCTAAGCAGCGGACAGCATTATGCAAGGCTAAATCGTGCTTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP08338
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072483|gb|BQ821821.1|BQ821821
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGC
EST: gi|161814081|gb|FC100053.1|FC100053
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|239842148|gb|GR284005.1|GR284005
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|34992949|gb|CF566866.1|CF566866
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|49466218|gb|BP094131.1|BP094131
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCG
EST: gi|161823061|gb|FC106631.1|FC106631
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14234760|gb|BG853576.1|BG853576
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|22075286|gb|BQ824062.1|BQ824062
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|22072482|gb|BQ821820.1|BQ821820
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7615657|gb|AW721097.1|AW721097
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14234925|gb|BG853741.1|BG853741
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161815628|gb|FC102640.1|FC102640
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7615656|gb|AW721096.1|AW721096
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161820547|gb|FC111039.1|FC111039
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|15367772|gb|BI527198.1|BI527198
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161796663|gb|FC084501.1|FC084501
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCATCCAAGGCTGGTGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|8513970|gb|BE121865.1|BE121865
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTC
EST: gi|16433852|gb|BI999078.1|BI999078
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGC
EST: gi|6543063|gb|AV388847.1|AV388847
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGG
EST: gi|14231506|gb|BG850322.1|BG850322
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|16073465|gb|BI875461.1|BI875461
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTC
EST: gi|16071875|gb|BI873871.1|BI873871
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|6546207|gb|AV391991.1|AV391991
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7545626|gb|AW676114.1|AW676114
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTC
EST: gi|8513969|gb|BE121864.1|BE121864
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTTTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|22073320|gb|BQ822658.1|BQ822658
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14234759|gb|BG853575.1|BG853575
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|16073539|gb|BI875535.1|BI875535
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTAATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161819870|gb|FC110245.1|FC110245
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7616300|gb|AW721740.1|AW721740
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCT
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCT
EST: gi|7615848|gb|AW721288.1|AW721288
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|34985811|gb|CF559728.1|CF559728
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACCGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161820572|gb|FC111051.1|FC111051
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|22053464|gb|BQ810768.1|BQ810768
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCA-GGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161792813|gb|FC080728.1|FC080728
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|23364391|gb|BU652211.1|BU652211
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161815473|gb|FC104838.1|FC104838
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14231502|gb|BG850318.1|BG850318
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|9210139|gb|BE337054.1|BE337054
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|34992950|gb|CF566867.1|CF566867
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAAGCTGGAGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|16073464|gb|BI875460.1|BI875460
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|23364390|gb|BU652210.1|BU652210
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|15371489|gb|BI530915.1|BI530915
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|15367771|gb|BI527197.1|BI527197
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTTTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|16072470|gb|BI874466.1|BI874466
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTTTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14239830|gb|BG858646.1|BG858646
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14231505|gb|BG850321.1|BG850321
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161802700|gb|FC092433.1|FC092433
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|22048640|gb|BQ808297.1|BQ808297
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7616299|gb|AW721739.1|AW721739
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCC
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCC
EST: gi|161805621|gb|FC090677.1|FC090677
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|14228602|gb|BG847434.1|BG847434
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|9263837|gb|BE351984.1|BE351984
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTTTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|7593157|gb|AW707520.1|AW707520
EST:     GATTCTGATTCTGATTNTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCG
EST: gi|14239006|gb|BG857838.1|BG857838
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|161816879|gb|FC101365.1|FC101365
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCTG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
EST: gi|34985810|gb|CF559727.1|CF559727
EST:     GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG                         TGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG
genomic: GATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTGgtgagtggga ... tgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacgcgagattccttattgacttgaccgaccctcgtcctgttcctgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCGCCGCCCTCTAAGCAGCGGACAGCATTATGCAAGGCTAAATCGTGCTTCA
                              ccctcgtcctgttcct  CT-rich tract
              ttattga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcggctgcatgcaggctttgtagttctcgtctgctgtccctggcgcacgcgagattccttattgacttgaccgaccctcgtcctgttcctgccttgcagTGGGTATCATTCTGTCGTCCAAGGCTGGCGCTTCTGCCGCTGCCCCTCCCGCCGCCCTCTAAGCAGCGGACAGCATTATGCAAGGCTAAATCGTGCTTCA

- - - -gcatgca
- - - - - - - - -tttgtag
- - - - - - - - - - - - - - - - - - - - - - -gcacgcg