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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatggacacgatcaaggaattctccattttgagatctacatacgttctgccaacccccagtgctagcctgaactgcaaagccgttcgcccgtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTTGAGGGCGTCCTCAACGAGGGCCAAATCATTGATAAGGTCAACTACTACC

Basic information

species Chlamydomonas reinhardtii
transcript EDP07960
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15698479|gb|BI722784.1|BI722784
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|6543659|gb|AV389443.1|AV389443
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|49463497|gb|BP091410.1|BP091410
EST:     AAATCGACACGGACAAGTACCCCGGCATCGCCAGCCAGCACCGCATCCAG                         GCCCTGNCCACCATTGCGCTTTTCATGAAGGG
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGG
EST: gi|16073360|gb|BI875356.1|BI875356
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|10774419|gb|AV625242.1|AV625242
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|14240636|gb|BG859452.1|BG859452
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|14239865|gb|BG858697.1|BG858697
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|9210197|gb|BE337112.1|BE337112
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATACAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
EST: gi|16073377|gb|BI875373.1|BI875373
EST:     AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAG                         GCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT
genomic: AAATCGACACGGACAAGTACCCCGGCATTGCCAGCCAGCACCGCATCCAGgtgaggctgc ... gtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatggacacgatcaaggaattctccattttgagatctacatacgttctgccaacccccagtgctagcctgaactgcaaagccgttcgcccgtacccgcagGCCCTGCCCACCATTGCGCTTTTCATGAAGGGCAAGATGGTCTTCCGCTTTGAGGGCGTCCTCAACGAGGGCCAAATCATTGATAAGGTCAACTACTACC

-atggaca
- - - - - - - - - - - - - ttttgag
- - - - - - - - - - - - - - - - - -ctacata
- - - - - - - - - - - - - - - - - - - - - - - - - - accccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagcc