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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggacattgggcgggcagatgggggggacggccggtgggcgctaggactgcttggcgggaaaggttgtgaaccgtgcaattgcgcaacatgagtctatgtgtcggtgctcacgctgcatcccttcttcctttgcactctcagGACAAGGCGGACGAGGCGCGGCGTGTGGAGCTGCTGTCGCAGCTGAAGAAGAAGATTGGGCCGGTGGCGGGCGACCTGGAGCGCCTGCTCAAAGCCTTTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07948
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6546138|gb|AV391922.1|AV391922
EST:     TGTCGCCCAGTGATTTCGCCTTCTACAAGGGCTACGTCGACTACAGCCAG                         GACAAGGCGGACGAGGCGC
genomic: TGTCGCCCAGTGATTTCGCCTTCTACAAGGGCTACGTCGACTACAGCCAGgtgggacatt ... gcactctcagGACAAGGCGGACGAGGCGC
EST: gi|16428846|gb|BI994072.1|BI994072
EST:     TGTCGCCCAGTGATTTCGCCTTCTACAAGGGCTACGTCGACTACAGCCAG                         GACAAGGCGGACGAGGCGCGGCGTGTGGAGCTGCTGTCGCAGCTGAAGAAG
genomic: TGTCGCCCAGTGATTTCGCCTTCTACAAGGGCTACGTCGACTACAGCCAGgtgggacatt ... gcactctcagGACAAGGCGGACGAGGCGCGGCGTGTGGAGCTGCTGTCGCAGCTGAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgagtctatgtgtcggtgctcacgctgcatcccttcttcctttgcactctcagGACAAGGCGGACGAGGCGCGGCGTGTGGAGCTGCTGTCGCAGCTGAAGAAGAAGATTGGGCCGGTGGCGGGCGACCTGGAGCGCCTGCTCAAAGCCTTTG
                  tgctcac  putative branch site (score: 2)
                          ctgcatcccttcttcc  CT-rich tract