Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggtcgcatccggttggcagcgcgtttagctttcctgatgggctcgagctgttggctctgactgcttatgttgtgcctttgcttgcgttgccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGCCGGAAGCGCGCCAAGAAGGTCCGCGGCGCCAAGAAGAACGCGGGCGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07861
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP07861 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 3'ss of exon 2
------cggtcgcat-ccggttggcagcgcgtttagctttcctgatgggctcgagctgttggctctgactgcttatgttgtgcctttgcttgcgttgccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGCCGGAAGCGCGCCAAGAAGGTCCGCGGCGCCAAGAAGAACGCGGGCGCCG
        |  ||||  |  ||   | | |||  | |  |    | |  |  |   | |    | || ||   |   || |   ||||||  | |     || |||||| ||||| |  |  ||||| |||||||| |||||||||||||||||| |   |||  | || |||||| |||| || |  ||||||             
ttttccatgatgcatatcaatt--taactcgtgaaacactatgaaagcccatgttttatgtattttgtctttct-cattttctttttgctgccat----acctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGAAGAACAGAGCAAAGAAGATCCGTGGTGTGAAGAAG-------------

upper sequence: EDP07861 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G091383_T01 (Zea mays), 3'ss of exon 2
cggtcgcatccggttggcagcgcg-tttagctttcctgatgggctcga-gctgttggctctga--ctgcttatgttgtgcctttgcttgcgttgccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGCCGGAAGCGCGCCAAGAAGGTCCGCGGCGCCAAGAAGAACGCGGGCGCCG
    |  ||||   |  ||  ||  |  || |||  |||| |   | |  ||||  |   ||   |||||||| ||   |    |  ||  | |    |  |||||||| || |  |  ||||||||||||||||||||||||||||||||| |   |||  | || |||||| ||||||| |  ||||||             
----caaatccatgttacattgcaatgcagattttgtgattgaaacaacactgtctgtattggtcctgcttatttttgacaagagtgtgtttgggtttctgcagAACGGTCTTGCTACCAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34990273|gb|CF564190.1|CF564190
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTTCCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34993205|gb|CF567122.1|CF567122
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTTCCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|49470188|gb|BP098049.1|BP098049
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22068885|gb|BQ818644.1|BQ818644
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22074992|gb|BQ823768.1|BQ823768
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22048698|gb|BQ808334.1|BQ808334
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34988143|gb|CF562060.1|CF562060
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTTCCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34991436|gb|CF565353.1|CF565353
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22070885|gb|BQ820223.1|BQ820223
EST:     TGAACCTGA-GGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: TGA-CCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34988333|gb|CF562250.1|CF562250
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCTC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34992755|gb|CF566672.1|CF566672
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22073687|gb|BQ823025.1|BQ823025
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34991766|gb|CF565683.1|CF565683
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22064082|gb|BQ815611.1|BQ815611
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|161813085|gb|FC101384.1|FC101384
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22050946|gb|BQ809427.1|BQ809427
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22055045|gb|BQ811657.1|BQ811657
EST:     TGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCNGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: TGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACC-GCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34988334|gb|CF562251.1|CF562251
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22072659|gb|BQ821997.1|BQ821997
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGG
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGG
EST: gi|22050940|gb|BQ809425.1|BQ809425
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAAATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34990274|gb|CF564191.1|CF564191
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22072357|gb|BQ821695.1|BQ821695
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34982544|gb|CF556461.1|CF556461
EST:     ATGACCTGAAGGCCGCCAAGCGGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|8514457|gb|BE122352.1|BE122352
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22065622|gb|BQ816453.1|BQ816453
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22053108|gb|BQ810595.1|BQ810595
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGACTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|6551543|gb|AV397327.1|AV397327
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34985612|gb|CF559529.1|CF559529
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34993208|gb|CF567125.1|CF567125
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|4662690|gb|AI625890.1|AI625890
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGC-TCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34988144|gb|CF562061.1|CF562061
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34985559|gb|CF559476.1|CF559476
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34990940|gb|CF564857.1|CF564857
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGGAAGGAG
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATG-AAGGAG
EST: gi|34992736|gb|CF566653.1|CF566653
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34992735|gb|CF566652.1|CF566652
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34991435|gb|CF565352.1|CF565352
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGT
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22069690|gb|BQ819228.1|BQ819228
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22050943|gb|BQ809426.1|BQ809426
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|4766447|gb|AI662864.1|AI662864
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGC-TCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22067087|gb|BQ817333.1|BQ817333
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGAAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|161795398|gb|FC078555.1|FC078555
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34985613|gb|CF559530.1|CF559530
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22071098|gb|BQ820436.1|BQ820436
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAAATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|49469141|gb|BP097002.1|BP097002
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGT
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGT
EST: gi|34988142|gb|CF562059.1|CF562059
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCTC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34990275|gb|CF564192.1|CF564192
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34988105|gb|CF562022.1|CF562022
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAA
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAA
EST: gi|34985581|gb|CF559498.1|CF559498
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|161821895|gb|FC107603.1|FC107603
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34982546|gb|CF556463.1|CF556463
EST:     ATGACCTGAAGGCCGCCAAGCGGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22077074|gb|BQ825850.1|BQ825850
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34985580|gb|CF559497.1|CF559497
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|22074993|gb|BQ823769.1|BQ823769
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|161808269|gb|FC095924.1|FC095924
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
EST: gi|34985558|gb|CF559475.1|CF559475
EST:     ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCCCCTCGTCAGG                         AACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC
genomic: ATGACCTGAAGGCCGCCAAGCAGTTCGAGCCCAAGTACCGCCTCGTCAGGgtgagcgcgc ... ccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctgttggctctgactgcttatgttgtgcctttgcttgcgttgccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGCCGGAAGCGCGCCAAGAAGGTCCGCGGCGCCAAGAAGAACGCGGGCGCCG
          ctctgac  putative branch site (score: 3)
                    ttatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cggtcgcatccggttggcagcgcgtttagctttcctgatgggctcgagctgttggctctgactgcttatgttgtgcctttgcttgcgttgccgccaacagAACGGCCTGGAGAAGAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGCGCCGGAAGCGCGCCAAGAAGGTCCGCGGCGCCAAGAAGAACGCGGGCGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgt