1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagagcttcggtgcatcgtctacgctgttgtgttgcgtgccatgcgcctatcgttcaacgtttcagctatatagcggtcatactcttgcacagggggggttttccctgtacctcttccaacctgtctgtgtccctgtgttttggctgacgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACGGCAGCTGTGAGACGGCACGGCCTGGGGCCTCTGAGAGCGGAAATATTC
species | Chlamydomonas reinhardtii |
transcript | EDP07785 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAG GACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACEST: gi|23364980|gb|BU652800.1|BU652800
genomic: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAGgtgagagctt ... cgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGAC
EST: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAG GACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACEST: gi|15700217|gb|BI724522.1|BI724522
genomic: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAGgtgagagctt ... cgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGAC
EST: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAG GACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACEST: gi|239841476|gb|GR283333.1|GR283333
genomic: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAGgtgagagctt ... cgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGAC
EST: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAG GACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAAC
genomic: CGGCCGTCCTTGAAATCCCCAGCAAGGACTGCCCCTACGACCCGAACCAGgtgagagctt ... cgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAAC
ccctgtacctcttccaacctgtctgtgtccctgtgttttggctgacgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACGGCAGCTGTGAGACGGCACGGCCTGGGGCCTCTGAGAGCGGAAATATTC
ggctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagcttcggtgcatcgtctacgctgttgtgttgcgtgccatgcgcctatcgttcaacgtttcagctatatagcggtcatactcttgcacagggggggttttccctgtacctcttccaacctgtctgtgtccctgtgttttggctgacgtcctgcagGACTCGCTGCTCACGCGCGTGAAGCACATTGCGGGCTTCAACTAAGCGGACGGCAGCTGTGAGACGGCACGGCCTGGGGCCTCTGAGAGCGGAAATATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG