1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgcggcagcataccgtcctcgtgtggccccgtccagatatctaactctgcccccaaccccccccccctacggtcacatcgcgccgctcgtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTCCGCAAGGGCGCCACCGAGCCGCTGCGCTACACCGGCGCCGGCAAGAAGG
species | Chlamydomonas reinhardtii |
transcript | EDP07728 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCG GAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTCEST: gi|49467417|gb|BP095330.1|BP095330
genomic: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCGgtgagtgcat ... gtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTC
EST: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCG GAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTCEST: gi|49461370|gb|BP089283.1|BP089283
genomic: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCGgtgagtgcat ... gtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTC
EST: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCG GAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTC
genomic: GTGTGCCTGTGGCCAAGCGGGAGTTCGAGCCCAAGAACGTGGAACTGGCGgtgagtgcat ... gtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTC
actctgcccccaaccccccccccctacggtcacatcgcgccgctcgtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTCCGCAAGGGCGCCACCGAGCCGCTGCGCTACACCGGCGCCGGCAAGAAGG
atctaac putative branch site (score: 2)
ctcgtcccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcggcagcataccgtcctcgtgtggccccgtccagatatctaactctgcccccaaccccccccccctacggtcacatcgcgccgctcgtccccgcagGAGAAGTACAAGGCTGACGACGAGGGCAAGTTCCCGCTCTACTACATCTTCCGCAAGGGCGCCACCGAGCCGCTGCGCTACACCGGCGCCGGCAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - -gcatacc
- - - - - - - - - - tcgtgtg
- - - - - - - - - - - - - - - - - ccagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtcaca