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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taattactggtagtaaagctttcgcgccgcaatgccgcaacgatgtactcagcacatgcctggaaaaccccttctgctccctgcgccccgcaccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGCTGTCCCGTGCGCTCGGCGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP07421
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP07421 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 3'ss of exon 3
----------taattac-tggtagtaaagctttc--gcgccgcaatg-ccgcaacgatg--tactcagcacatgc-ctggaaaaccccttctgctccctgcgccccgcaccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGCTGTCCCGTGCGCTCGGCGTGG
           ||  |     |  || |  || |  |||   || |  |    || |     |||| |||||| | ||      |  ||         || |    |||    ||||   ||||| |||||||| |||||||||||||||||||||   || || || || || ||||  ||| |  ||  ||||||     | || || ||     
gtgccctgtccaaccatacaattttagaatttcctagcgttacattaacttttaccacagccactc-gcacatacactaaccttcaactaaaatatggtgtgttttgcaa---acagATGATCAATGAGAAGCCCCAGGTGATCCAGGAGTACGAGTCAGGTAAAGCTATTCCGAACCAGCAGATCATCGGGAAGCTTGAAAGGGCTCTTGGAACAA

upper sequence: EDP07421 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
taattactggtagtaaagctttcgcgccgcaatgccgcaacgatgtactcagcacatgcctggaaaaccccttct---gctccctgcgccccgcaccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGCTGTCCCGTGCGCTCGGCGTGG
  |       |  |   | | | |     | ||     | |   | | |      || | |||    || |||     | |           |  |    |||   ||||| |||||||| ||||||||||||||||| |||   |||||||| || |||||||  ||| |  |    |||||     | || || ||   | 
--aaagtctatgctgttgttgtagtagttccat-tgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768800|gb|AV619625.1|AV619625
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCA
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCA
EST: gi|10768260|gb|AV619085.1|AV619085
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49459062|gb|BP086975.1|BP086975
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|7413146|gb|AW651900.1|AW651900
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22073524|gb|BQ822862.1|BQ822862
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|14237426|gb|BG856242.1|BG856242
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22054816|gb|BQ811537.1|BQ811537
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAAGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49464081|gb|BP091994.1|BP091994
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGAC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|14230368|gb|BG849184.1|BG849184
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10779492|gb|AV636172.1|AV636172
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAG
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAG
EST: gi|10774073|gb|AV624896.1|AV624896
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10789616|gb|AV626981.1|AV626981
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAG
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAG
EST: gi|22058706|gb|BQ813076.1|BQ813076
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10793411|gb|AV630777.1|AV630777
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCC
EST: gi|22054862|gb|BQ811558.1|BQ811558
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|9460035|gb|BE453031.1|BE453031
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10768483|gb|AV619308.1|AV619308
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22068291|gb|BQ818230.1|BQ818230
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|6547171|gb|AV392955.1|AV392955
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49463369|gb|BP091282.1|BP091282
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAACGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCC
EST: gi|15368469|gb|BI527895.1|BI527895
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49469600|gb|BP097461.1|BP097461
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22061490|gb|BQ814287.1|BQ814287
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGAAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|14234820|gb|BG853636.1|BG853636
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49464364|gb|BP092277.1|BP092277
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGNC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22049570|gb|BQ808855.1|BQ808855
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49458786|gb|BP086699.1|BP086699
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACNGAGAAGCCGCAGGTGATCCAG
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAAC-GAGAAGCCGCAGGTGATCCAG
EST: gi|14240460|gb|BG859276.1|BG859276
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22069541|gb|BQ819108.1|BQ819108
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10771832|gb|AV622655.1|AV622655
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10126127|gb|BE724831.1|BE724831
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10791438|gb|AV628804.1|AV628804
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|14238923|gb|BG857739.1|BG857739
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49459305|gb|BP087218.1|BP087218
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49459607|gb|BP087520.1|BP087520
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|22062921|gb|BQ815004.1|BQ815004
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49458703|gb|BP086616.1|BP086616
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGA
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGA
EST: gi|22049569|gb|BQ808854.1|BQ808854
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|10778538|gb|AV635218.1|AV635218
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCA
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCA
EST: gi|22075787|gb|BQ824563.1|BQ824563
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|16072973|gb|BI874969.1|BI874969
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         ACTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCC
EST: gi|49461876|gb|BP089789.1|BP089789
EST:     TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAG                         GCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGA
genomic: TTGTGCAGGCGCGCACGGCGAAGAAGATGACCCAGGCGCAGCTAGCGCAGgttagccggg ... caccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taattactggtagtaaagctttcgcgccgcaatgccgcaacgatgtactcagcacatgcctggaaaaccccttctgctccctgcgccccgcaccccacagGCTATCAACGAGAAGCCGCAGGTGATCCAGGAGTACGAGCAGGGCAAGGCCATCCCCAACCCCCAGGTGCTCTCGAAGCTGTCCCGTGCGCTCGGCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - gtactca
- - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcc