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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacaaaggtcggcgtgtggcaaagtgctccgatactttacatagtaatgactttcactgcttgcccggcgacctgcctgaccggaatggccgcctcctactgtattttgtctgtatgcgccgcacgccaaacgcctgctcgccccgtctcgccctttgccctgctgtttgtccacgcggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCGCAGGTGCGGTCGCTGCTGTTCCCAGGCTACTTTTTCTACTATGCCGCCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05700
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14232891|gb|BG851707.1|BG851707
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|161807564|gb|FC094608.1|FC094608
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATTTGGCGTCACGCTGTCGCAG                         GACCTGCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|15703074|gb|BI727379.1|BI727379
EST:     TCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: TCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|161816809|gb|FC101334.1|FC101334
EST:     GCGTCACGCTGTCGCAG                         GACCTGCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: GCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|161811168|gb|FC095319.1|FC095319
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTGCGCGGGACTTGGGCTGTGCAGTACGACGCCTTNCA-GGGGGTGGC
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTT-CAAGGGGGTGGC
EST: gi|7593414|gb|AW707665.1|AW707665
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|7593513|gb|AW707764.1|AW707764
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|14229784|gb|BG848600.1|BG848600
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTT
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTT
EST: gi|14232500|gb|BG851316.1|BG851316
EST:     CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: CCTACCAGCACCGCTTCAGCCTGCCCGGATCTGGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
EST: gi|15699395|gb|BI723700.1|BI723700
EST:     GGCGTCACGCTGTCGCAG                         GACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG
genomic: GGCGTCACGCTGTCGCAGgtaagacaaa ... cggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagacaaaggtcggcgtgtggcaaagtgctccgatactttacatagtaatgactttcactgcttgcccggcgacctgcctgaccggaatggccgcctcctactgtattttgtctgtatgcgccgcacgccaaacgcctgctcgccccgtctcgccctttgccctgctgtttgtccacgcggcgcgcagGACCTTCGCGGGACTTGGGCTGTGCAGTACGACGCCTTCAAGGGGGTGGCGCAGGTGCGGTCGCTGCTGTTCCCAGGCTACTTTTTCTACTATGCCGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT