1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccgcggccgtaattctgcatcgcatacactgtcctacgcgtaatgttttccttttgctctttaacacacacacacacacacacacacacacgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
species | Chlamydomonas reinhardtii |
transcript | EDP05666 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGGEST: gi|10776805|gb|AV633485.1|AV633485
genomic: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
EST: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGGEST: gi|34984288|gb|CF558205.1|CF558205
genomic: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
EST: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGGEST: gi|10782138|gb|AV638818.1|AV638818
genomic: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
EST: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGGEST: gi|10779152|gb|AV635832.1|AV635832
genomic: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
EST: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGGEST: gi|10774394|gb|AV625217.1|AV625217
genomic: CCTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCAGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
EST: CTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCCNA-GGAGACCGCATG GACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
genomic: CTTCGCCGACTTCAGCCGCAAGGTCAAGCACATCC-AGGGAGACCGCATGgtgaggcggt ... cgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
ttttccttttgctctttaacacacacacacacacacacacacacacgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
ctttaac putative branch site (score: 3)
tctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcggccgtaattctgcatcgcatacactgtcctacgcgtaatgttttccttttgctctttaacacacacacacacacacacacacacacgactcacagGACTTCCCCGAGGTGGAGCGCAAGCTGGCCCGCGAGGGCTTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - -acgcgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca