1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcgaggtcgaatgacccgtaaccggtatgggtgacagaggttgcgcaagtggtgttggcggaaggggaggcatgggtggaaggggcggcaagacaccagcgaacaggattcgggcctaatcccagtcgctctttgatttccctcggcctgcagGCCGCGCACTACCACCGCTGTTCAATTGGCTACCGGGCGAGCTGGACGAGGTGCCCGCGGACATTGTCCGCAAGCTCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP05327 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCACCCCTTCTTCGATGAGCTGCGAGATCCGGCCACGCGGCTTCCGAACG GCCGCGCACTACCACCGCTGTTTCA-TTGGCTGCCGGGCGAGCTGGACGAGEST: gi|161798027|gb|FC087776.1|FC087776
genomic: GCACCCCTTCTTCGATGAGCTGCGGGATCCGGCCACGCGGCTTCCGAACGgtgagcgagg ... cggcctgcagGCCGCGCACTACCACCGCTGTT-CAATTGGCTACCGGGCGAGCTGGACGAG
EST: GCACCCCTTCTTCGATGAGCTGCGAGATCCGGCCACGCGGCTTCCGAACG GCCGCGCACTACCACCGCTGNTTCA-TTGGCT
genomic: GCACCCCTTCTTCGATGAGCTGCGGGATCCGGCCACGCGGCTTCCGAACGgtgagcgagg ... cggcctgcagGCCGCGCACTACCACCGCTG-TTCAATTGGCT
gcgaacaggattcgggcctaatcccagtcgctctttgatttccctcggcctgcagGCCGCGCACTACCACCGCTGTTCAATTGGCTACCGGGCGAGCTGGACGAGGTGCCCGCGGACATTGTCCGCAAGCTCCAG
ctctttgatttccctc CT-rich tract
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgaggtcgaatgacccgtaaccggtatgggtgacagaggttgcgcaagtggtgttggcggaaggggaggcatgggtggaaggggcggcaagacaccagcgaacaggattcgggcctaatcccagtcgctctttgatttccctcggcctgcagGCCGCGCACTACCACCGCTGTTCAATTGGCTACCGGGCGAGCTGGACGAGGTGCCCGCGGACATTGTCCGCAAGCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT