Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05070
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 3
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgc----tccgctccaacgctcgcccgttcttcc--ccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCC---GCGTGAGGCAA
                                                                                                                           | |   ||  |||||  || |    | || |  |||| |     |   ||   | |||  |    || |    |  ||| | ||||||||||| ||||||||||||||||||||    |||||   ||| |  | |      |    | |  ||| ||    | |||    |  |  | || 
--------------------------------------------------------------------------------------------------------------------------gtctttacggccatgcttcattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAA---GGCAAGGGAACCTCTCTGTTCTAAGCGTATCATAAACTTGCTCAGGGTCTCAAGTATCTGTCAG

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GRMZM2G160351_T03 (Zea mays), 3'ss of exon 2
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgc----tccgctccaacgctcgcccgttcttcc--ccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGC-CTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
                                                                                                    |    ||  ||  |  | |||  | |   ||  |||||  || |    | || |  |||| |     |   ||   | |||  |    || |    |  ||| | ||||||||||| ||||||||||||||||||||    |||||   ||| |  | |  |||                                       
----------------------------------------------------------------------------------------------------actctcaacacccg--atcaaggtctttacggccatgcttcattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaacttcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAA---GGCAAGGGAACCTCTCTGTTCTAA--------------------------------------

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggc-ctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTC-CGCGTGAGGCAA
                                                                                              |  |      ||||||  |    || |||  | |||   |||||  || || |  | |||   |||       |||     |||     |||||      ||| | ||||||||||| |||||||||||||||||||||      |   | |  |  |  |     ||    |  |||  || ||     | | |     | | 
------------------------------------------------------------------------------------------tacttttgcctcaaacagta--attttgccactgattcccaaacatgc-tcattgccgttttgaacacgtggttgatgctt----gctatgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAA-AGGAACATCTCTCTTCTAGATGGAATATTAGAATTTGCAATTTCACACACTCTCTGTAC

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctc-caacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAG---AAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
                                                                                                                 ||    ||| |    | || |||    | | |   | | ||   ||    | |   |     | | |   ||| ||     ||| | |||||||| ||||||||||||||||||||||||   ||||| |  |    ||       |     |   |       ||  |    |   | ||  |   
---------------------------------------------------------------------------------------------------------------gtgcatagaacatagatcagttcattataccg-gatttgtaacttggtaatttgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG---

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgct-ccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAG---AAGGG--CAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
                                                                                                           ||| | | | || || |    |  | | |  |  | |  |   | |  |  |  | || | | |  || ||       |  |     ||| | ||||||||||| ||||||||||| |||||||||   |||||  || ||     |   |   |     |   ||   || | |      |  |  ||      
-----------------------------------------------------------------------------------------------------------gta-atgtctgcgacat---tctttacctttgttaatcactctttagtc--tcagttctgtttcttacactttgtgtgtggtttttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG-----

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAG---AAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
                                                                                           || |  |   |||  ||  |           | ||  |  ||| | |   |     | || | ||  |||      ||  ||| |||    ||  |      ||||||||||||||||||||||| || || |||||||||   ||||| | | ||   |      ||||  |   | |   |  ||| |  | |  |     |    
------------------------------------------------------------------------------------------tggtttcgcgtgcggaagccctcatagtgttttagtctctttgcttacttgaacaatc-ctcaggc--ttcaggtgact--aacactcaaa-gtgatattttgcagCGCTGCAAGCACTTCGAGATTGGAGGAGACAAGAAGGGCAAGGGTACCCAACTTTTTTAAACTACATGTCTTAATTGAAATGTTAAAATTGTGGACTGGT---

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgac--gccgttcgctccgctccaacgctcgcccgt-tcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGG--GCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
                     | |   | || || ||      |   ||  |||    ||  ||| |   |  |    |    |  | ||    ||   ||  |  | | ||||  |     || | | | | |      |  | ||||||  |  ||  ||| ||   ||    ||| ||    | | |   | |||||| ||||||||||||||||| ||||| |||||||||  |   | |||  |||         ||     | ||      || |  ||||      ||| ||| 
---------------------gtgatttaatccgttt-tatcttagttttcggcc---atttacatttgcctaggaataagtgtccgacttctatgcataattgggact-caagtta---ttttattcacattctattatctcttgcctcttcctcgctattcactagcctgacgcgcacgtttttatgtaatcaacagCGATGCAAGCACTTCGAGATTGGTGGAGACAAGAAGGGGAAAGGAACACAACTCTTTTAGATAT-AATGCTTTACTTTGTATTCCGAGAAATTATGAAGCA-

upper sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGT----TAGGAACGTGTAACGAGTCCGCGTGAGGCAA-
                                                                 ||||   |  |    |  ||||       || || |     |  ||  |   | |  |  |     | |||     | ||   | |   |  ||||  ||   |   | |   |  ||||       |||||| |||||||||||||||||||| || |||||||||   |||||   |||    |  | |   | | ||    |  ||| || |  |   |  |  || || || 
-----------------------------------------------------------------gtaattagtcctttactctgtgcgcactatgaggta-----aacactggtgtgtatgtcat--taatacat-----aatgatgttt--tgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAG---GGCAAGGGAACACAACT-CTTCTAGACAGTGTTGTTAGAATGT-TCTCCTTTTAGAATGCGGAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7709538|gb|AW772956.1|AW772956
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34987515|gb|CF561432.1|CF561432
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|22066976|gb|BQ817267.1|BQ817267
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34987514|gb|CF561431.1|CF561431
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|10786240|gb|AV642912.1|AV642912
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34984015|gb|CF557932.1|CF557932
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34988612|gb|CF562529.1|CF562529
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|7546035|gb|AW676523.1|AW676523
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|22055211|gb|BQ811714.1|BQ811714
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34989445|gb|CF563362.1|CF563362
EST:     GCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: GCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34983766|gb|CF557683.1|CF557683
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|161805193|gb|FC091718.1|FC091718
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34990343|gb|CF564260.1|CF564260
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|10788173|gb|AV644845.1|AV644845
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|6550594|gb|AV396378.1|AV396378
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|10784804|gb|AV641476.1|AV641476
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34994842|gb|CF568759.1|CF568759
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34988338|gb|CF562255.1|CF562255
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|22074012|gb|BQ823256.1|BQ823256
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34981145|gb|CF555062.1|CF555062
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34989175|gb|CF563092.1|CF563092
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34988337|gb|CF562254.1|CF562254
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCTCTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34982457|gb|CF556374.1|CF556374
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|10789531|gb|AV645260.1|AV645260
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGCGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34991411|gb|CF565328.1|CF565328
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|7545738|gb|AW676226.1|AW676226
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34991412|gb|CF565329.1|CF565329
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|7545739|gb|AW676227.1|AW676227
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34984533|gb|CF558450.1|CF558450
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34981094|gb|CF555011.1|CF555011
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|10789373|gb|AV645102.1|AV645102
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|22075594|gb|BQ824370.1|BQ824370
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|34987789|gb|CF561706.1|CF561706
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|7546171|gb|AW676659.1|AW676659
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACG
EST: gi|22055213|gb|BQ811715.1|BQ811715
EST:     TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAG                         CGCTNGCA-GCACTTCGAGATCGGT
genomic: TGCGCATGCAGTGCCAAGAGTGCAAGCAGACCTGCATGAAGGGCCTGAAGgtgggtgggg ... ttccccacagCGCT-GCAAGCACTTCGAGATCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggcctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGTTAGGAACGTGTAACGAGTCCGCGTGAGGCAA
      ctctgac  putative branch site (score: 3)
                                  ctcgcccgttcttccc  putative PPT