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...tcatcccgccctcgtttggctcccagccttgcatcccacccaccacttaaacccgcccaaacttgctcaaacccaaaccgactcgctttcgccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACGACGGTGTGACCATTGCTCGCGAGGTGGAGCTGGAGGACCCCGTGGAGA
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|49465644|gb|BP093557.1|BP093557
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|10782915|gb|AV639587.1|AV639587
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|10786054|gb|AV642726.1|AV642726
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|49467062|gb|BP094975.1|BP094975
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|6552100|gb|AV397884.1|AV397884
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|22051882|gb|BQ809934.1|BQ809934
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|6547392|gb|AV393176.1|AV393176
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|49465381|gb|BP093294.1|BP093294
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|6546630|gb|AV392414.1|AV392414
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGGGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|49460469|gb|BP088382.1|BP088382
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|15702828|gb|BI727133.1|BI727133
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACEST: gi|16072229|gb|BI874225.1|BI874225
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: GGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: GGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
cttaaacccgcccaaacttgctcaaacccaaaccgactcgctttcgccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACGACGGTGTGACCATTGCTCGCGAGGTGGAGCTGGAGGACCCCGTGGAGA
ctcgctttcgcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcccgccctcgtttggctcccagccttgcatcccacccaccacttaaacccgcccaaacttgctcaaacccaaaccgactcgctttcgccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAACGACGGTGTGACCATTGCTCGCGAGGTGGAGCTGGAGGACCCCGTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - -tcgtttg
- - - - - - - - - - - - - - - - - - cacccac
- - - - - - - - - - - - - - - - - - - - - - acttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccca