1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttggcaaacaatacttcgcacgcacggtgtcggccccattttccttgcgctttcctattaatcatacaagttatacaacacaccgccgctacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAGGTGACCACGAACAGCCCCTTCCTGGACAGCTTCCTGTCGTCCGGTTACG
species | Chlamydomonas reinhardtii |
transcript | EDP02978 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTG GTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAGEST: gi|10126693|gb|BE725413.1|BE725413
genomic: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTGgtgagcgggg ... tacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAG
EST: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTG GTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAGEST: gi|22057815|gb|BQ812740.1|BQ812740
genomic: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTGgtgagcgggg ... tacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAG
EST: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTG GTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAG
genomic: ACCTACCTGCTCATGCACAAGCAGCGGCACCACGTGgtgagcgggg ... tacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAG
ttgcgctttcctattaatcatacaagttatacaacacaccgccgctacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAGGTGACCACGAACAGCCCCTTCCTGGACAGCTTCCTGTCGTCCGGTTACG
tattaat putative branch site (score: 2)
tattaatcatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcaaacaatacttcgcacgcacggtgtcggccccattttccttgcgctttcctattaatcatacaagttatacaacacaccgccgctacacaacagGTGACGGAGGTGGTGGAGCCCTATTACGCCAAGCAGCGCGCGGTGAAGAAGGTGACCACGAACAGCCCCTTCCTGGACAGCTTCCTGTCGTCCGGTTACG
- - - aaacaat
- - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacc