1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cctgccgcgccccttgctcctgcctccgcccaactgattcatgcgcacccccatcccccaccccggtgctgcccccaacccctttccgaaccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCTACTTCGTGGAGGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCT
species | Chlamydomonas reinhardtii |
transcript | EDP02792 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCEST: gi|6545883|gb|AV391667.1|AV391667
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGC
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG ACGATGCAGCAGTCGGTCCGTGGCTANCA-CGCCTGGTCGCCGGCTCAGCGEST: gi|22064056|gb|BQ815585.1|BQ815585
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTA-CAACGCCTGGTCGCCGGCTCAGCG
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGATGCAGCAGTCGGTCCGTGGCTACAACGCCEST: gi|22055545|gb|BQ811883.1|BQ811883
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCC
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGANTGCAGCAGTCGGTCCGTGGCTACCAACGCCTGGTCGCCGGCTCAGCEST: gi|16071862|gb|BI873858.1|BI873858
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGA-TGCAGCAGTCGGTCCGTGGCTAC-AACGCCTGGTCGCCGGCTCAGC
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCEST: gi|16072830|gb|BI874826.1|BI874826
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGC
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCEST: gi|161800274|gb|FC084430.1|FC084430
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGC
EST: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTG CCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGC
genomic: CTCGCCGGCCCCTGCTACCCGGCATGCACCGCACGCCCGGCTTCGCGCTGgtgaggttgg ... ccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgccgcgccccttgctcctgcctccgcccaactgattcatgcgcacccccatcccccaccccggtgctgcccccaacccctttccgaaccacgtacagCCGATGCAGCAGTCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCTACTTCGTGGAGGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - atgcgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacccc